Result of FASTA (omim) for
pF1KE0105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0105, 181 aa
1>>>pF1KE0105 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1131+/-0.000418; mu= 13.7230+/- 0.026
mean_var=70.6665+/-13.988, 0's: 0 Z-trim(111.5): 25 B-trim: 1266 in 1/49
Lambda= 0.152569
statistics sampled from 20042 (20058) to 20042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.235), width: 16
Scan time: 5.490
The best scores are: opt bits E(85289)
NP_113630 (OMIM: 300698) transmembrane protein 47 ( 181) 1216 276.7 1.4e-74
NP_071404 (OMIM: 609301) p53 apoptosis effector re ( 193) 309 77.1 1.9e-14
NP_000295 (OMIM: 118220,118300,139393,145900,16250 ( 160) 142 40.3 0.0019
NP_696997 (OMIM: 118220,118300,139393,145900,16250 ( 160) 142 40.3 0.0019
NP_001268384 (OMIM: 118220,118300,139393,145900,16 ( 160) 142 40.3 0.0019
NP_696996 (OMIM: 118220,118300,139393,145900,16250 ( 160) 142 40.3 0.0019
NP_001268385 (OMIM: 118220,118300,139393,145900,16 ( 160) 142 40.3 0.0019
>>NP_113630 (OMIM: 300698) transmembrane protein 47 [Hom (181 aa)
initn: 1216 init1: 1216 opt: 1216 Z-score: 1459.9 bits: 276.7 E(85289): 1.4e-74
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY
130 140 150 160 170 180
pF1KE0 Y
:
NP_113 Y
>>NP_071404 (OMIM: 609301) p53 apoptosis effector relate (193 aa)
initn: 203 init1: 94 opt: 309 Z-score: 380.5 bits: 77.1 E(85289): 1.9e-14
Smith-Waterman score: 309; 30.9% identity (63.0% similar) in 181 aa overlap (7-179:5-178)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWV-TADHQYYLSLWESCR
:. : . :: :.. :. .:. :. . .:. ..:: ::: .:
NP_071 MIRCGLACERCRWILPLLLLS------AIAFDIIALAGRGWLQSSDHGQTSSLWWKCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 KPASLDIWH---CESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
. .. . . :.: . : :. :.:. : :..: :.......: . : : ..
NP_071 QEGGGSGSYEEGCQSLMEYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLK----IYHEFNWGYGLAWGATIFSFGGAILYCL
.: :.:.:. :::.::.:. .: .:. . . .::.::..:.:::. .: :...:
NP_071 GLLALAAVFQIISLVIYPVKYTQTFTLHANPAVTYIYNWAYGFGWAATIILIGCAFFFCC
120 130 140 150 160 170
180
pF1KE0 NPKNYEDYY
: ::::
NP_071 LP-NYEDDLLGNAKPRYFYTSA
180 190
>>NP_000295 (OMIM: 118220,118300,139393,145900,162500,18 (160 aa)
initn: 114 init1: 79 opt: 142 Z-score: 183.0 bits: 40.3 E(85289): 0.0019
Smith-Waterman score: 142; 21.5% identity (59.5% similar) in 158 aa overlap (19-172:3-155)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCR
: :.... . .: : : . ... :.... . .::..:
NP_000 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KPASLDIWHCESTLSSDWQI---ATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
.: .. :: :. ..: ::. : . . . :. :. :... :. :::
NP_000 TSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKN
...:.. . . . ..: .. : :. . ....: ::: : ... ....: .
NP_000 FQILAGLCV-MSAAAIYTVRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKR
110 120 130 140 150
180
pF1KE0 YEDYY
NP_000 E
160
>>NP_696997 (OMIM: 118220,118300,139393,145900,162500,18 (160 aa)
initn: 114 init1: 79 opt: 142 Z-score: 183.0 bits: 40.3 E(85289): 0.0019
Smith-Waterman score: 142; 21.5% identity (59.5% similar) in 158 aa overlap (19-172:3-155)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCR
: :.... . .: : : . ... :.... . .::..:
NP_696 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KPASLDIWHCESTLSSDWQI---ATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
.: .. :: :. ..: ::. : . . . :. :. :... :. :::
NP_696 TSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKN
...:.. . . . ..: .. : :. . ....: ::: : ... ....: .
NP_696 FQILAGLCV-MSAAAIYTVRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKR
110 120 130 140 150
180
pF1KE0 YEDYY
NP_696 E
160
>>NP_001268384 (OMIM: 118220,118300,139393,145900,162500 (160 aa)
initn: 114 init1: 79 opt: 142 Z-score: 183.0 bits: 40.3 E(85289): 0.0019
Smith-Waterman score: 142; 21.5% identity (59.5% similar) in 158 aa overlap (19-172:3-155)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCR
: :.... . .: : : . ... :.... . .::..:
NP_001 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KPASLDIWHCESTLSSDWQI---ATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
.: .. :: :. ..: ::. : . . . :. :. :... :. :::
NP_001 TSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKN
...:.. . . . ..: .. : :. . ....: ::: : ... ....: .
NP_001 FQILAGLCV-MSAAAIYTVRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKR
110 120 130 140 150
180
pF1KE0 YEDYY
NP_001 E
160
>>NP_696996 (OMIM: 118220,118300,139393,145900,162500,18 (160 aa)
initn: 114 init1: 79 opt: 142 Z-score: 183.0 bits: 40.3 E(85289): 0.0019
Smith-Waterman score: 142; 21.5% identity (59.5% similar) in 158 aa overlap (19-172:3-155)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCR
: :.... . .: : : . ... :.... . .::..:
NP_696 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KPASLDIWHCESTLSSDWQI---ATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
.: .. :: :. ..: ::. : . . . :. :. :... :. :::
NP_696 TSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKN
...:.. . . . ..: .. : :. . ....: ::: : ... ....: .
NP_696 FQILAGLCV-MSAAAIYTVRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKR
110 120 130 140 150
180
pF1KE0 YEDYY
NP_696 E
160
>>NP_001268385 (OMIM: 118220,118300,139393,145900,162500 (160 aa)
initn: 114 init1: 79 opt: 142 Z-score: 183.0 bits: 40.3 E(85289): 0.0019
Smith-Waterman score: 142; 21.5% identity (59.5% similar) in 158 aa overlap (19-172:3-155)
10 20 30 40 50
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCR
: :.... . .: : : . ... :.... . .::..:
NP_001 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KPASLDIWHCESTLSSDWQI---ATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
.: .. :: :. ..: ::. : . . . :. :. :... :. :::
NP_001 TSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKN
...:.. . . . ..: .. : :. . ....: ::: : ... ....: .
NP_001 FQILAGLCV-MSAAAIYTVRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKR
110 120 130 140 150
180
pF1KE0 YEDYY
NP_001 E
160
181 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:59:41 2016 done: Fri Nov 4 02:59:42 2016
Total Scan time: 5.490 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]