FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0105, 181 aa
  1>>>pF1KE0105 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8386+/-0.00093; mu= 15.4677+/- 0.055
 mean_var=69.2726+/-14.360, 0's: 0 Z-trim(105.8): 25  B-trim: 313 in 1/47
 Lambda= 0.154097
 statistics sampled from 8588 (8600) to 8588 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.264), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS14235.1 TMEM47 gene_id:83604|Hs108|chrX        ( 181) 1216 279.1 1.1e-75
CCDS5188.1 PERP gene_id:64065|Hs108|chr6           ( 193)  309 77.4 5.5e-15


>>CCDS14235.1 TMEM47 gene_id:83604|Hs108|chrX             (181 aa)
 initn: 1216 init1: 1216 opt: 1216  Z-score: 1472.6  bits: 279.1 E(32554): 1.1e-75
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY
              130       140       150       160       170       180

        
pF1KE0 Y
       :
CCDS14 Y
        

>>CCDS5188.1 PERP gene_id:64065|Hs108|chr6                (193 aa)
 initn: 203 init1:  94 opt: 309  Z-score: 382.5  bits: 77.4 E(32554): 5.5e-15
Smith-Waterman score: 309; 30.9% identity (63.0% similar) in 181 aa overlap (7-179:5-178)

               10        20        30        40         50         
pF1KE0 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWV-TADHQYYLSLWESCR
             :.   :   . :: :..      :. .:. :. . .:. ..::    ::: .: 
CCDS51   MIRCGLACERCRWILPLLLLS------AIAFDIIALAGRGWLQSSDHGQTSSLWWKCS
                 10        20              30        40        50  

      60           70        80        90       100       110      
pF1KE0 KPASLDIWH---CESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVA
       . .. .  .   :.: .   :  :. :.:. :  :..: :.......:  .   : : ..
CCDS51 QEGGGSGSYEEGCQSLMEYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIG
             60        70        80        90       100       110  

        120       130       140           150       160       170  
pF1KE0 VMLFAAVVLQVCSLVLYPIKFIETVSLK----IYHEFNWGYGLAWGATIFSFGGAILYCL
        .:  :.:.:. :::.::.:. .: .:.    . . .::.::..:.:::. .: :...: 
CCDS51 GLLALAAVFQIISLVIYPVKYTQTFTLHANPAVTYIYNWAYGFGWAATIILIGCAFFFCC
            120       130       140       150       160       170  

            180              
pF1KE0 NPKNYEDYY             
        : ::::               
CCDS51 LP-NYEDDLLGNAKPRYFYTSA
             180       190   




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:59:40 2016 done: Fri Nov  4 02:59:41 2016
 Total Scan time:  1.850 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]