FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0103, 400 aa
  1>>>pF1KE0103 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0044+/-0.000423; mu= 18.5142+/- 0.026
 mean_var=63.0779+/-12.611, 0's: 0 Z-trim(109.6): 24  B-trim: 0 in 0/53
 Lambda= 0.161486
 statistics sampled from 17828 (17835) to 17828 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.209), width:  16
 Scan time:  8.370

The best scores are:                                      opt bits E(85289)
NP_077310 (OMIM: 604400,612048,614302) transmembra ( 400) 2604 615.7  6e-176
XP_016862665 (OMIM: 604400,612048,614302) PREDICTE ( 365) 2387 565.2 9.2e-161


>>NP_077310 (OMIM: 604400,612048,614302) transmembrane p  (400 aa)
 initn: 2604 init1: 2604 opt: 2604  Z-score: 3279.8  bits: 615.7 E(85289): 6e-176
Smith-Waterman score: 2604; 99.5% identity (99.8% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KE0 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHNNPSAMAVESFTA
       :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: :
NP_077 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT
              310       320       330       340       350       360

              370       380       390       400
pF1KE0 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
       ::::::::::::::::::::::::::::::::::::::::
NP_077 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
              370       380       390       400

>>XP_016862665 (OMIM: 604400,612048,614302) PREDICTED: t  (365 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 3007.2  bits: 565.2 E(85289): 9.2e-161
Smith-Waterman score: 2387; 99.5% identity (99.7% similar) in 365 aa overlap (36-400:1-365)

          10        20        30        40        50        60     
pF1KE0 SSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKTATSLA
                                     ::::::::::::::::::::::::::::::
XP_016                               MFVGLMAFLLSFYLIFTNEGRALKTATSLA
                                             10        20        30

          70        80        90       100       110       120     
pF1KE0 EGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWV
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KE0 ETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHNNPSAMAVESFTATAPFV
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::: ::::::
XP_016 ETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMATAPFV
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KE0 QIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLRVSFSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLRVSFSY
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KE0 AGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRELRSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRELRSNS
              220       230       240       250       260       270

         310       320       330       340       350       360     
pF1KE0 MKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVA
              280       290       300       310       320       330

         370       380       390       400
pF1KE0 AGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
       :::::::::::::::::::::::::::::::::::
XP_016 AGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
              340       350       360     




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:10:19 2016 done: Fri Nov  4 03:10:20 2016
 Total Scan time:  8.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]