FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0103, 400 aa
  1>>>pF1KE0103 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6915+/-0.00103; mu= 14.4405+/- 0.062
 mean_var=61.4337+/-12.073, 0's: 0 Z-trim(103.0): 16  B-trim: 0 in 0/50
 Lambda= 0.163633
 statistics sampled from 7213 (7217) to 7213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.222), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS2618.1 TMEM43 gene_id:79188|Hs108|chr3         ( 400) 2604 623.6  1e-178


>>CCDS2618.1 TMEM43 gene_id:79188|Hs108|chr3              (400 aa)
 initn: 2604 init1: 2604 opt: 2604  Z-score: 3322.1  bits: 623.6 E(32554): 1e-178
Smith-Waterman score: 2604; 99.5% identity (99.8% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KE0 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHNNPSAMAVESFTA
       :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: :
CCDS26 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT
              310       320       330       340       350       360

              370       380       390       400
pF1KE0 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
       ::::::::::::::::::::::::::::::::::::::::
CCDS26 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
              370       380       390       400




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:10:18 2016 done: Fri Nov  4 03:10:19 2016
 Total Scan time:  2.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]