FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0030, 552 aa
  1>>>pF1KE0030 552 - 552 aa - 552 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1230+/-0.00102; mu= 13.5394+/- 0.061
 mean_var=63.6148+/-12.768, 0's: 0 Z-trim(103.3): 22  B-trim: 7 in 1/47
 Lambda= 0.160803
 statistics sampled from 7349 (7356) to 7349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.226), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS32869.1 NCLN gene_id:56926|Hs108|chr19         ( 563) 3562 835.4       0


>>CCDS32869.1 NCLN gene_id:56926|Hs108|chr19              (563 aa)
 initn: 3562 init1: 3562 opt: 3562  Z-score: 4462.0  bits: 835.4 E(32554):    0
Smith-Waterman score: 3562; 100.0% identity (100.0% similar) in 552 aa overlap (1-552:12-563)

                          10        20        30        40         
pF1KE0            MLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQP
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQP
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE0 YGTRNAVLNTEARTMAAEVLSRRCVLMRLLDFSYEQYQKALRQSAGAVVIILPRAMAAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YGTRNAVLNTEARTMAAEVLSRRCVLMRLLDFSYEQYQKALRQSAGAVVIILPRAMAAVP
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KE0 QDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQAASASQGSASAAEVLLRTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQAASASQGSASAAEVLLRTAT
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KE0 ANGFQMVTSGVQSKAVSDWLIASVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ANGFQMVTSGVQSKAVSDWLIASVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADS
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KE0 NGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSL
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KE0 LQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKR
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KE0 INLAEDVLAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 INLAEDVLAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAE
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KE0 ALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQLVDKDSTFLSTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQLVDKDSTFLSTLE
              430       440       450       460       470       480

     470       480       490       500       510       520         
pF1KE0 HHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAY
              490       500       510       520       530       540

     530       540       550  
pF1KE0 VAVQHFSLLYKTVQRLLVKAKTQ
       :::::::::::::::::::::::
CCDS32 VAVQHFSLLYKTVQRLLVKAKTQ
              550       560   




552 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:28:14 2016 done: Fri Nov  4 07:28:15 2016
 Total Scan time:  3.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]