FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0027, 570 aa
  1>>>pF1KE0027 570 - 570 aa - 570 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1444+/-0.00075; mu= 15.5736+/- 0.045
 mean_var=93.8027+/-19.102, 0's: 0 Z-trim(111.3): 20  B-trim: 0 in 0/52
 Lambda= 0.132424
 statistics sampled from 12253 (12262) to 12253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.377), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS1114.1 MSTO1 gene_id:55154|Hs108|chr1          ( 570) 3916 758.3 5.8e-219


>>CCDS1114.1 MSTO1 gene_id:55154|Hs108|chr1               (570 aa)
 initn: 3916 init1: 3916 opt: 3916  Z-score: 4044.6  bits: 758.3 E(32554): 5.8e-219
Smith-Waterman score: 3916; 100.0% identity (100.0% similar) in 570 aa overlap (1-570:1-570)

               10        20        30        40        50        60
pF1KE0 MAGGAREVLTLQLGHFAGFVGAHWWNQQDAALGRATDSKEPPGELCPDVLYRTGRTLHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGGAREVLTLQLGHFAGFVGAHWWNQQDAALGRATDSKEPPGELCPDVLYRTGRTLHGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ETYTPRLILMDLKGSLSSLKEEGGLYRDKQLDAAIAWQGKLTTHKEELYPKNPYLQDFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETYTPRLILMDLKGSLSSLKEEGGLYRDKQLDAAIAWQGKLTTHKEELYPKNPYLQDFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AEGVLSSDGVWRVKSIPNGKGSSPLPTATTPKPLIPTEASIRVWSDFLRVHLHPRSICMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEGVLSSDGVWRVKSIPNGKGSSPLPTATTPKPLIPTEASIRVWSDFLRVHLHPRSICMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QKYNHDGEAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QKYNHDGEAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VGAKAAELLQDEYSGRGIITWGLLPGPYHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VGAKAAELLQDEYSGRGIITWGLLPGPYHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SLGGSLGLRPEPPVSFPYLHYDATLPFHCSAILATALDTVTVPYRLCSSPVSMVHLADML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLGGSLGLRPEPPVSFPYLHYDATLPFHCSAILATALDTVTVPYRLCSSPVSMVHLADML
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 SFCGKKVVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTPLSACGEPSGTRCFAQSVVLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SFCGKKVVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTPLSACGEPSGTRCFAQSVVLRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 IDRACHTSQLTPGTPPPSALHACTTGEEILAQYLQQQQPGVMSSSHLLLTPCRVAPPYPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IDRACHTSQLTPGTPPPSALHACTTGEEILAQYLQQQQPGVMSSSHLLLTPCRVAPPYPH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 LFSSCSPPGMVLDGSPKGAAVESIPVFGALCSSSSLHQTLEALARDLTKLDLRRWASFMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFSSCSPPGMVLDGSPKGAAVESIPVFGALCSSSSLHQTLEALARDLTKLDLRRWASFMD
              490       500       510       520       530       540

              550       560       570
pF1KE0 AGVEHDDVAELLQELQSLAQCYQGGDSLVD
       ::::::::::::::::::::::::::::::
CCDS11 AGVEHDDVAELLQELQSLAQCYQGGDSLVD
              550       560       570




570 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:56:58 2016 done: Sat Nov  5 21:56:58 2016
 Total Scan time:  3.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]