Result of FASTA (ccds) for
pF1KB9987
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9987, 574 aa
1>>>pF1KB9987 574 - 574 aa - 574 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3303+/-0.00095; mu= -2.7775+/- 0.057
mean_var=281.8081+/-57.183, 0's: 0 Z-trim(115.3): 12 B-trim: 226 in 2/50
Lambda= 0.076401
statistics sampled from 15853 (15862) to 15853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.487), width: 16
Scan time: 4.210
The best scores are: opt bits E(32554)
CCDS5092.1 TRAF3IP2 gene_id:10758|Hs108|chr6 ( 574) 4020 456.4 4.5e-128
CCDS5093.1 TRAF3IP2 gene_id:10758|Hs108|chr6 ( 565) 3956 449.3 5.9e-126
CCDS55050.1 TRAF3IP2 gene_id:10758|Hs108|chr6 ( 564) 3938 447.3 2.3e-125
CCDS55049.1 TRAF3IP2 gene_id:10758|Hs108|chr6 ( 109) 743 94.7 6.5e-20
>>CCDS5092.1 TRAF3IP2 gene_id:10758|Hs108|chr6 (574 aa)
initn: 4020 init1: 4020 opt: 4020 Z-score: 2412.9 bits: 456.4 E(32554): 4.5e-128
Smith-Waterman score: 4020; 99.8% identity (100.0% similar) in 574 aa overlap (1-574:1-574)
10 20 30 40 50 60
pF1KB9 MPPQLQETRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MPPQLQETRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 PALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNR
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS50 PALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQDQPHHQPPNR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
490 500 510 520 530 540
550 560 570
pF1KB9 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
::::::::::::::::::::::::::::::::::
CCDS50 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
550 560 570
>>CCDS5093.1 TRAF3IP2 gene_id:10758|Hs108|chr6 (565 aa)
initn: 3956 init1: 3956 opt: 3956 Z-score: 2374.8 bits: 449.3 E(32554): 5.9e-126
Smith-Waterman score: 3956; 99.8% identity (100.0% similar) in 565 aa overlap (10-574:1-565)
10 20 30 40 50 60
pF1KB9 MPPQLQETRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 PALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNR
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS50 PALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQDQPHHQPPNR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVE
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
480 490 500 510 520 530
550 560 570
pF1KB9 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
::::::::::::::::::::::::::::::::::
CCDS50 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
540 550 560
>>CCDS55050.1 TRAF3IP2 gene_id:10758|Hs108|chr6 (564 aa)
initn: 3208 init1: 3208 opt: 3938 Z-score: 2364.1 bits: 447.3 E(32554): 2.3e-125
Smith-Waterman score: 3938; 99.6% identity (99.8% similar) in 565 aa overlap (10-574:1-564)
10 20 30 40 50 60
pF1KB9 MPPQLQETRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQQVIQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 PALPGQPLPGASVRGLHPVQKVILNYPSPWDQEERPAQRDCSFPGLPRHQDQPHHQPPNR
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS55 PALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQDQPHHQPPNR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVE
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS55 AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRD-TVMIIVAISPKYKQDVE
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYS
480 490 500 510 520 530
550 560 570
pF1KB9 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
::::::::::::::::::::::::::::::::::
CCDS55 WPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL
540 550 560
>>CCDS55049.1 TRAF3IP2 gene_id:10758|Hs108|chr6 (109 aa)
initn: 743 init1: 743 opt: 743 Z-score: 471.0 bits: 94.7 E(32554): 6.5e-20
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 109 aa overlap (466-574:1-109)
440 450 460 470 480 490
pF1KB9 FQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDEDEHGLHT
::::::::::::::::::::::::::::::
CCDS55 MIIVAISPKYKQDVEGAESQLDEDEHGLHT
10 20 30
500 510 520 530 540 550
pF1KB9 KYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLRE
40 50 60 70 80 90
560 570
pF1KB9 EEYVAPPRGPLPTLQVVPL
:::::::::::::::::::
CCDS55 EEYVAPPRGPLPTLQVVPL
100
574 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:05:33 2016 done: Sat Nov 5 16:05:33 2016
Total Scan time: 4.210 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]