FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9943, 497 aa
  1>>>pF1KB9943 497 - 497 aa - 497 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1063+/-0.00125; mu= -1.9741+/- 0.074
 mean_var=312.0408+/-65.206, 0's: 0 Z-trim(111.2): 32  B-trim: 264 in 3/47
 Lambda= 0.072605
 statistics sampled from 12139 (12161) to 12139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.374), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS34213.1 CCDC112 gene_id:153733|Hs108|chr5      ( 529) 2870 314.5 1.9e-85
CCDS4117.1 CCDC112 gene_id:153733|Hs108|chr5       ( 446) 2341 259.0 7.9e-69


>>CCDS34213.1 CCDC112 gene_id:153733|Hs108|chr5           (529 aa)
 initn: 2870 init1: 2870 opt: 2870  Z-score: 1647.6  bits: 314.5 E(32554): 1.9e-85
Smith-Waterman score: 3171; 93.8% identity (94.0% similar) in 529 aa overlap (1-497:1-529)

               10        20        30        40        50        60
pF1KB9 MAALTTVVVAAAATAVAGAVAGAGAATGTGVGATPAPQQSDGCFSTSGGIRPFHLQNWKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAALTTVVVAAAATAVAGAVAGAGAATGTGVGATPAPQQSDGCFSTSGGIRPFHLQNWKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KVNQTKKAEFVRTAEKFKNQVINMEKDKHSHFYNQKSDFRIEHSMLEELENKLIHSRKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KVNQTKKAEFVRTAEKFKNQVINMEKDKHSHFYNQKSDFRIEHSMLEELENKLIHSRKTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 IKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPNTLPEEVLDFEKFL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS34 IKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPSTLPEEVLDFEKFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKWYQKFLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKWYQKFLAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 WKKQKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WKKQKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKE
              370       380       390       400       410       420

              430       440                                        
pF1KB9 IREKAEKAEKRKNAADEISRFQER--------------------------------VENN
       ::::::::::::::::::::::::                                ::::
CCDS34 IREKAEKAEKRKNAADEISRFQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVENN
              430       440       450       460       470       480

      450       460       470       480       490       
pF1KB9 VSRDPSRLYKPTKGWEERTKKIGPTGSGPLLHIPHRAIPTWRQGIQRRV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSRDPSRLYKPTKGWEERTKKIGPTGSGPLLHIPHRAIPTWRQGIQRRV
              490       500       510       520         

>>CCDS4117.1 CCDC112 gene_id:153733|Hs108|chr5            (446 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 1349.1  bits: 259.0 E(32554): 7.9e-69
Smith-Waterman score: 2642; 92.6% identity (92.8% similar) in 446 aa overlap (84-497:1-446)

            60        70        80        90       100       110   
pF1KB9 HLQNWKQKVNQTKKAEFVRTAEKFKNQVINMEKDKHSHFYNQKSDFRIEHSMLEELENKL
                                     ::::::::::::::::::::::::::::::
CCDS41                               MEKDKHSHFYNQKSDFRIEHSMLEELENKL
                                             10        20        30

           120       130       140       150       160       170   
pF1KB9 IHSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IHSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQ
               40        50        60        70        80        90

           180       190       200       210       220       230   
pF1KB9 RLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPNTLPEEV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS41 RLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPSTLPEEV
              100       110       120       130       140       150

           240       250       260       270       280       290   
pF1KB9 LDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKW
              160       170       180       190       200       210

           300       310       320       330       340       350   
pF1KB9 YQKFLALEERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YQKFLALEERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKK
              220       230       240       250       260       270

           360       370       380       390       400       410   
pF1KB9 QKLAVEAWKKQKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QKLAVEAWKKQKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEE
              280       290       300       310       320       330

           420       430       440                                 
pF1KB9 FLRLEKEIREKAEKAEKRKNAADEISRFQER-----------------------------
       :::::::::::::::::::::::::::::::                             
CCDS41 FLRLEKEIREKAEKAEKRKNAADEISRFQERDLHKLELKILDRQAKEDEKSQKQRRLAKL
              340       350       360       370       380       390

             450       460       470       480       490       
pF1KB9 ---VENNVSRDPSRLYKPTKGWEERTKKIGPTGSGPLLHIPHRAIPTWRQGIQRRV
          :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEKVENNVSRDPSRLYKPTKGWEERTKKIGPTGSGPLLHIPHRAIPTWRQGIQRRV
              400       410       420       430       440      




497 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:36:17 2016 done: Sat Nov  5 20:36:17 2016
 Total Scan time:  3.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]