Result of FASTA (ccds) for
pF1KB9934
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9934, 647 aa
1>>>pF1KB9934 647 - 647 aa - 647 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5924+/-0.000756; mu= 16.0978+/- 0.046
mean_var=126.4957+/-24.911, 0's: 0 Z-trim(113.5): 8 B-trim: 223 in 1/52
Lambda= 0.114035
statistics sampled from 14086 (14093) to 14086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.433), width: 16
Scan time: 4.450
The best scores are: opt bits E(32554)
CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8 ( 647) 4366 729.3 3.8e-210
CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8 ( 281) 1825 311.0 1.4e-84
CCDS47930.1 EEF1D gene_id:1936|Hs108|chr8 ( 257) 1413 243.2 3.4e-64
CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8 ( 262) 1202 208.5 9.7e-54
CCDS2367.1 EEF1B2 gene_id:1933|Hs108|chr2 ( 225) 736 131.8 1e-30
>>CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8 (647 aa)
initn: 4366 init1: 4366 opt: 4366 Z-score: 3886.2 bits: 729.3 E(32554): 3.8e-210
Smith-Waterman score: 4366; 99.8% identity (100.0% similar) in 647 aa overlap (1-647:1-647)
10 20 30 40 50 60
pF1KB9 MRSGKASCTLETVWEDKHKYEEAERRFYEHEATQAAASAQQLPAEGPAMNGPGQDDPEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MRSGKASCTLETVWEDKHKYEEAERRFYEHEATQAAASAQQLPAEGPAMNGPGQDDPEDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DEAEAPDGGSRRDPRKSQDSRKPLQKKRKRSPKSGLGPADLALLGLSAERVWLDKSLFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DEAEAPDGGSRRDPRKSQDSRKPLQKKRKRSPKSGLGPADLALLGLSAERVWLDKSLFDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AESSYRQKLADVAAQAAWPPALAPWGLCTHGNQVACHHVTWGIWVNKSSFDQAERAFVEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AESSYRQKLADVAAQAAWPPALAPWGLCTHGNQVACHHVTWGIWVNKSSFDQAERAFVEW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQALLLAPEGSRRQGTPNTGQQVAVPDLAHQPSPPVNGQPPLGSLQALVREVWLEKPRYD
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SQALLLAPDGSRRQGTPNTGQQVAVPDLAHQPSPPVNGQPPLGSLQALVREVWLEKPRYD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 AAERGFYEALFDGHPPGKVRLQERAGLAEGARRGRRDRRGRNILGNKRAGLRRADGEAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AAERGFYEALFDGHPPGKVRLQERAGLAEGARRGRRDRRGRNILGNKRAGLRRADGEAPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ALPYCYFLQKDAEAPWLSKPAYDSAECRHHAAEALRVAWCLEAASLSHRPGPRSGLSVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ALPYCYFLQKDAEAPWLSKPAYDSAECRHHAAEALRVAWCLEAASLSHRPGPRSGLSVSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARAR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 ENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 REERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 REERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV
550 560 570 580 590 600
610 620 630 640
pF1KB9 PVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI
610 620 630 640
>>CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8 (281 aa)
initn: 1825 init1: 1825 opt: 1825 Z-score: 1631.8 bits: 311.0 E(32554): 1.4e-84
Smith-Waterman score: 1825; 100.0% identity (100.0% similar) in 281 aa overlap (367-647:1-281)
340 350 360 370 380 390
pF1KB9 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
::::::::::::::::::::::::::::::
CCDS64 MATNFLAHEKIWFDKFKYDDAERRFYEQMN
10 20 30
400 410 420 430 440 450
pF1KB9 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
40 50 60 70 80 90
460 470 480 490 500 510
pF1KB9 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
100 110 120 130 140 150
520 530 540 550 560 570
pF1KB9 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
160 170 180 190 200 210
580 590 600 610 620 630
pF1KB9 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
220 230 240 250 260 270
640
pF1KB9 QSVDIAAFNKI
:::::::::::
CCDS64 QSVDIAAFNKI
280
>>CCDS47930.1 EEF1D gene_id:1936|Hs108|chr8 (257 aa)
initn: 1409 init1: 1409 opt: 1413 Z-score: 1266.0 bits: 243.2 E(32554): 3.4e-64
Smith-Waterman score: 1623; 91.5% identity (91.5% similar) in 281 aa overlap (367-647:1-257)
340 350 360 370 380 390
pF1KB9 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
::::::::::::::::::::::::::::::
CCDS47 MATNFLAHEKIWFDKFKYDDAERRFYEQMN
10 20 30
400 410 420 430 440 450
pF1KB9 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
::::::::: :::::::::::::::::::::::::::
CCDS47 GPVAGASRQ------------------------SSGPGASSGTSGDHGELVVRIASLEVE
40 50 60
460 470 480 490 500 510
pF1KB9 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
70 80 90 100 110 120
520 530 540 550 560 570
pF1KB9 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
130 140 150 160 170 180
580 590 600 610 620 630
pF1KB9 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
190 200 210 220 230 240
640
pF1KB9 QSVDIAAFNKI
:::::::::::
CCDS47 QSVDIAAFNKI
250
>>CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8 (262 aa)
initn: 1699 init1: 1202 opt: 1202 Z-score: 1078.3 bits: 208.5 E(32554): 9.7e-54
Smith-Waterman score: 1665; 93.2% identity (93.2% similar) in 281 aa overlap (367-647:1-262)
340 350 360 370 380 390
pF1KB9 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
::::::::::::::::::::::::::::::
CCDS56 MATNFLAHEKIWFDKFKYDDAERRFYEQMN
10 20 30
400 410 420 430 440 450
pF1KB9 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDH-------------
40 50 60 70
460 470 480 490 500 510
pF1KB9 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ------VVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
80 90 100 110 120 130
520 530 540 550 560 570
pF1KB9 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
140 150 160 170 180 190
580 590 600 610 620 630
pF1KB9 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHV
200 210 220 230 240 250
640
pF1KB9 QSVDIAAFNKI
:::::::::::
CCDS56 QSVDIAAFNKI
260
>>CCDS2367.1 EEF1B2 gene_id:1933|Hs108|chr2 (225 aa)
initn: 749 init1: 726 opt: 736 Z-score: 664.9 bits: 131.8 E(32554): 1e-30
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (483-647:60-225)
460 470 480 490 500
pF1KB9 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
:: ..:. : .... .: .:: .
CCDS23 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
30 40 50 60 70 80
510 520 530 540 550 560
pF1KB9 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
CCDS23 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
90 100 110 120 130 140
570 580 590 600 610 620
pF1KB9 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
CCDS23 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
150 160 170 180 190 200
630 640
pF1KB9 ITKFEEHVQSVDIAAFNKI
:: ::..:::.:.::::::
CCDS23 ITAFEDYVQSMDVAAFNKI
210 220
647 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:53:29 2016 done: Sat Nov 5 14:53:29 2016
Total Scan time: 4.450 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]