FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9923, 342 aa
  1>>>pF1KB9923 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8461+/-0.000303; mu= 0.5898+/- 0.019
 mean_var=186.3539+/-38.001, 0's: 0 Z-trim(123.4): 23  B-trim: 38 in 1/52
 Lambda= 0.093952
 statistics sampled from 43081 (43104) to 43081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.505), width:  16
 Scan time:  8.470

The best scores are:                                      opt bits E(85289)
NP_037438 (OMIM: 605964) sorting nexin-15 isoform  ( 342) 2297 322.9 6.2e-88
NP_680086 (OMIM: 605964) sorting nexin-15 isoform  ( 256) 1504 215.4 1.1e-55


>>NP_037438 (OMIM: 605964) sorting nexin-15 isoform A [H  (342 aa)
 initn: 2297 init1: 2297 opt: 2297  Z-score: 1699.7  bits: 322.9 E(85289): 6.2e-88
Smith-Waterman score: 2297; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
              250       260       270       280       290       300

              310       320       330       340  
pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
       ::::::::::::::::::::::::::::::::::::::::::
NP_037 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
              310       320       330       340  

>>NP_680086 (OMIM: 605964) sorting nexin-15 isoform B [H  (256 aa)
 initn: 1708 init1: 1500 opt: 1504  Z-score: 1120.7  bits: 215.4 E(85289): 1.1e-55
Smith-Waterman score: 1540; 74.6% identity (74.9% similar) in 342 aa overlap (1-342:1-256)

               10        20        30        40        50        60
pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
       :::::::::::::::::::::::::::::::::::::::::                   
NP_680 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKE-------------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
                                                                   
NP_680 ------------------------------------------------------------
                                                                   

              310       320       330       340  
pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
              .::::::::::::::::::::::::::::::::::
NP_680 -------GDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
                    230       240       250      




342 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:50:07 2016 done: Sat Nov  5 14:50:08 2016
 Total Scan time:  8.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]