Result of FASTA (ccds) for
pF1KB9923
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9923, 342 aa
1>>>pF1KB9923 342 - 342 aa - 342 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3820+/-0.000754; mu= 3.3387+/- 0.046
mean_var=174.7220+/-35.476, 0's: 0 Z-trim(115.7): 17 B-trim: 460 in 2/49
Lambda= 0.097029
statistics sampled from 16272 (16284) to 16272 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.5), width: 16
Scan time: 3.220
The best scores are: opt bits E(32554)
CCDS8089.1 SNX15 gene_id:29907|Hs108|chr11 ( 342) 2297 332.9 2.3e-91
CCDS8090.1 SNX15 gene_id:29907|Hs108|chr11 ( 256) 1504 221.8 4.8e-58
CCDS1513.1 RPS6KC1 gene_id:26750|Hs108|chr1 (1066) 536 86.7 9.5e-17
>>CCDS8089.1 SNX15 gene_id:29907|Hs108|chr11 (342 aa)
initn: 2297 init1: 2297 opt: 2297 Z-score: 1753.6 bits: 332.9 E(32554): 2.3e-91
Smith-Waterman score: 2297; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
250 260 270 280 290 300
310 320 330 340
pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
::::::::::::::::::::::::::::::::::::::::::
CCDS80 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
310 320 330 340
>>CCDS8090.1 SNX15 gene_id:29907|Hs108|chr11 (256 aa)
initn: 1708 init1: 1500 opt: 1504 Z-score: 1155.5 bits: 221.8 E(32554): 4.8e-58
Smith-Waterman score: 1540; 74.6% identity (74.9% similar) in 342 aa overlap (1-342:1-256)
10 20 30 40 50 60
pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE
:::::::::::::::::::::::::::::::::::::::::
CCDS80 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKE-------------------
190 200 210 220
250 260 270 280 290 300
pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH
CCDS80 ------------------------------------------------------------
310 320 330 340
pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
.::::::::::::::::::::::::::::::::::
CCDS80 -------GDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
230 240 250
>>CCDS1513.1 RPS6KC1 gene_id:26750|Hs108|chr1 (1066 aa)
initn: 710 init1: 532 opt: 536 Z-score: 414.2 bits: 86.7 E(32554): 9.5e-17
Smith-Waterman score: 664; 40.7% identity (61.4% similar) in 334 aa overlap (3-336:5-307)
10 20 30 40 50
pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKL
:. . :. : :::..:. ::.::: :::::. .:...::::.:..::::::::.::
CCDS15 MTSYRERSADLARFYTVTEPQRHPRGYTVYKVTARVVSRRNPEDVQEIIVWKRYSDFKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 HGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQ
: .: :.::::. : :: : .. :::::. .::::::. :::::.:...:::: :: :
CCDS15 HKELWQIHKNLFRHSELFPPFAKGIVFGRFDETVIEERRQCAEDLLQFSANIPALYNSKQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 LKEFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPP
:..::.:: .. :. . :: : :. : . : : : ::
CCDS15 LEDFFKGGIINDSSELIGPAEAHSDSLIDTF----PECSTEGFSSDSDLVSLTVDVD---
130 140 150 160 170
180 190 200 210 220 230
pF1KB9 SSPAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATME
: :. :: .. .: .:. : : . :. ::. : .. .. :
CCDS15 -SLAE--LD---------DGMASNQNSPIRTFGLNLSSD-SSALGAVASDSEQSKTEE-E
180 190 200 210
240 250 260 270 280 290
pF1KB9 VESARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDG
:: : ::. . . . :: .: ::: ::. :. : :: . :: :
CCDS15 RESRSL-----FPGSLKPKLGKRD-----YLEKAGELIKLALKKEEEDDYEAASDFYRKG
220 230 240 250 260
300 310 320 330 340
pF1KB9 VHVLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP
: .::.:: .. :.:.:.::...:::: ::: : :.
CCDS15 VDLLLEGVQGESSPTRREAVKRRTAEYLMRAESISSLYGKPQLDDVSQPPGSLSSRPLWN
270 280 290 300 310 320
CCDS15 LRSPAEELKAFRVLGVIDKVLLVMDTRTEQTFILKGLRKSSEYSRNRKTIIPRCVPNMVC
330 340 350 360 370 380
342 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:50:06 2016 done: Sat Nov 5 14:50:06 2016
Total Scan time: 3.220 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]