FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9910, 590 aa
  1>>>pF1KB9910 590 - 590 aa - 590 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7931+/-0.000401; mu= 16.4133+/- 0.025
 mean_var=68.8299+/-13.757, 0's: 0 Z-trim(110.9): 18  B-trim: 18 in 1/56
 Lambda= 0.154592
 statistics sampled from 19335 (19342) to 19335 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.227), width:  16
 Scan time:  8.540

The best scores are:                                      opt bits E(85289)
NP_945327 (OMIM: 605297) negative elongation facto ( 599) 3886 876.2       0


>>NP_945327 (OMIM: 605297) negative elongation factor C/  (599 aa)
 initn: 3886 init1: 3886 opt: 3886  Z-score: 4681.1  bits: 876.2 E(85289):    0
Smith-Waterman score: 3886; 100.0% identity (100.0% similar) in 590 aa overlap (1-590:10-599)

                        10        20        30        40        50 
pF1KB9          MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF
                :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 MRRARSREGMAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKF
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB9 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 STRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQV
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KB9 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 QETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLM
              130       140       150       160       170       180

             180       190       200       210       220       230 
pF1KB9 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 LNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMV
              190       200       210       220       230       240

             240       250       260       270       280       290 
pF1KB9 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 CHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPR
              250       260       270       280       290       300

             300       310       320       330       340       350 
pF1KB9 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 ACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQD
              310       320       330       340       350       360

             360       370       380       390       400       410 
pF1KB9 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 HKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAEL
              370       380       390       400       410       420

             420       430       440       450       460       470 
pF1KB9 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 STLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQ
              430       440       450       460       470       480

             480       490       500       510       520       530 
pF1KB9 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIR
              490       500       510       520       530       540

             540       550       560       570       580       590
pF1KB9 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_945 YFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN
              550       560       570       580       590         




590 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:53:38 2016 done: Fri Nov  4 09:53:40 2016
 Total Scan time:  8.540 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]