FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9886, 725 aa
  1>>>pF1KB9886 725 - 725 aa - 725 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2177+/-0.000354; mu= 12.4037+/- 0.022
 mean_var=143.7053+/-28.679, 0's: 0 Z-trim(118.0): 4  B-trim: 0 in 0/56
 Lambda= 0.106989
 statistics sampled from 30538 (30541) to 30538 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.358), width:  16
 Scan time: 13.440

The best scores are:                                      opt bits E(85289)
NP_787072 (OMIM: 615283) exocyst complex component ( 725) 4750 745.2 2.1e-214


>>NP_787072 (OMIM: 615283) exocyst complex component 8 [  (725 aa)
 initn: 4750 init1: 4750 opt: 4750  Z-score: 3970.4  bits: 745.2 E(85289): 2.1e-214
Smith-Waterman score: 4750; 100.0% identity (100.0% similar) in 725 aa overlap (1-725:1-725)

               10        20        30        40        50        60
pF1KB9 MAMAMSDSGASRLRRQLESGGFEARLYVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 MAMAMSDSGASRLRRQLESGGFEARLYVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 RNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EEGVGGAGGRDHLRGQAGFFSTPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLLETPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 EEGVGGAGGRDHLRGQAGFFSTPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLLETPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYSLDGLAVVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 QYLVYNGDLVEYDADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYSLDGLAVVN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEDTKRALSEKRRREQEEAAAPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEDTKRALSEKRRREQEEAAAPRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PPQVTSKATNPFEDDEEEEPAVPEVEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 PPQVTSKATNPFEDDEEEEPAVPEVEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 DKLNHYLEDKPSPPPVKELRAKVEERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 DKLNHYLEDKPSPPPVKELRAKVEERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 LGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFEIDFAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 LGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFEIDFAG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TDSGCYSAFVVWARSAMGMFVDAFSKQVFDSKESLSTAAECVKVAKEHCQQLGDIGLDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 TDSGCYSAFVVWARSAMGMFVDAFSKQVFDSKESLSTAAECVKVAKEHCQQLGDIGLDLT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 FIIHALLVKDIQGALHSYKEIIIEATKHRNSEEMWRRMNLMTPEALGKLKEEMKSCGVSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 FIIHALLVKDIQGALHSYKEIIIEATKHRNSEEMWRRMNLMTPEALGKLKEEMKSCGVSN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 FEQYTGDDCWVNLSYTVVAFTKQTMGFLEEALKLYFPELHMVLLESLVEIILVAVQHVDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 FEQYTGDDCWVNLSYTVVAFTKQTMGFLEEALKLYFPELHMVLLESLVEIILVAVQHVDY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 SLRCEQDPEKKAFIRQNASFLYETVLPVVEKRFEEGVGKPAKQLQDLRNASRLIRVNPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 SLRCEQDPEKKAFIRQNASFLYETVLPVVEKRFEEGVGKPAKQLQDLRNASRLIRVNPES
              670       680       690       700       710       720

            
pF1KB9 TTSVV
       :::::
NP_787 TTSVV
            




725 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:29:02 2016 done: Sat Nov  5 20:29:04 2016
 Total Scan time: 13.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]