FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9883, 623 aa
  1>>>pF1KB9883 623 - 623 aa - 623 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8993+/-0.00104; mu= -3.2654+/- 0.063
 mean_var=373.3463+/-75.352, 0's: 0 Z-trim(115.9): 42  B-trim: 124 in 1/51
 Lambda= 0.066377
 statistics sampled from 16447 (16482) to 16447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.506), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(32554)
CCDS1537.1 CCDC185 gene_id:164127|Hs108|chr1       ( 623) 4248 420.8 2.7e-117


>>CCDS1537.1 CCDC185 gene_id:164127|Hs108|chr1            (623 aa)
 initn: 4248 init1: 4248 opt: 4248  Z-score: 2219.2  bits: 420.8 E(32554): 2.7e-117
Smith-Waterman score: 4248; 100.0% identity (100.0% similar) in 623 aa overlap (1-623:1-623)

               10        20        30        40        50        60
pF1KB9 MAGFSHFSQPPYRDLWEPPRPGGERESTQRLGGQRSGADSTACSRAGTPGAESEAGACWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MAGFSHFSQPPYRDLWEPPRPGGERESTQRLGGQRSGADSTACSRAGTPGAESEAGACWL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 HPHCSFTPRPRRRGCSDSLRGSRSLSDVARRPLERSRKHRPRSRRLEDAWGETGTKPRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HPHCSFTPRPRRRGCSDSLRGSRSLSDVARRPLERSRKHRPRSRRLEDAWGETGTKPRPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 WQPQTQLPPQRPQPCPHYPLAQGDSPPPCPGGAGTPLSGTFRVEKAQGGDQWAVPLGRHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 WQPQTQLPPQRPQPCPHYPLAQGDSPPPCPGGAGTPLSGTFRVEKAQGGDQWAVPLGRHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GRWSPSSVPSERSSVPSQKFKRHSACVCAQKRDSSDQVESLASRDSQPLASSKEMRSPHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GRWSPSSVPSERSSVPSQKFKRHSACVCAQKRDSSDQVESLASRDSQPLASSKEMRSPHT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QVLKSKLEEVVVSSQDQQIVALVLTRLKKAQRIRELQQQAAKAWEELKRSDQKVQMTLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 QVLKSKLEEVVVSSQDQQIVALVLTRLKKAQRIRELQQQAAKAWEELKRSDQKVQMTLER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ERRLLLRQSQEQWQEKEQRKTLQSPEQRGLRRDSQRKNVPPGESRWKEQPEDQESPRQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ERRLLLRQSQEQWQEKEQRKTLQSPEQRGLRRDSQRKNVPPGESRWKEQPEDQESPRQEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LEKARAQAEHRKQCQVRRLREQEKMLRNLREQHSLQLQRRLVEACRKRHLHAVEGQKKVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LEKARAQAEHRKQCQVRRLREQEKMLRNLREQHSLQLQRRLVEACRKRHLHAVEGQKKVQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 DTNLSSLINYQARKVLMDCQAKAEELLRQLSLEQSFQRSQEIHQGLRKERQRELREKAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DTNLSSLINYQARKVLMDCQAKAEELLRQLSLEQSFQRSQEIHQGLRKERQRELREKAQK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 EEEQLQQARWRAGESEEQRKMRKRILVELADEKIRQARSHVHKTTRDKVQHLRELNHLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EEEQLQQARWRAGESEEQRKMRKRILVELADEKIRQARSHVHKTTRDKVQHLRELNHLRE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 KNHHILKLKAEKEEKCHIEGIKEAIKKKEQRVQHISQGKDPNFQEFQKLPQASRREERAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KNHHILKLKAEKEEKCHIEGIKEAIKKKEQRVQHISQGKDPNFQEFQKLPQASRREERAP
              550       560       570       580       590       600

              610       620   
pF1KB9 PNSSLDQMVLEAQLRACQQNRGY
       :::::::::::::::::::::::
CCDS15 PNSSLDQMVLEAQLRACQQNRGY
              610       620   




623 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:59:39 2016 done: Fri Nov  4 19:59:40 2016
 Total Scan time:  4.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]