Result of FASTA (ccds) for
pF1KB9877
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9877, 546 aa
1>>>pF1KB9877 546 - 546 aa - 546 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5219+/-0.00101; mu= -1.7860+/- 0.061
mean_var=349.0718+/-70.221, 0's: 0 Z-trim(115.3): 10 B-trim: 156 in 1/54
Lambda= 0.068646
statistics sampled from 15855 (15862) to 15855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.487), width: 16
Scan time: 4.240
The best scores are: opt bits E(32554)
CCDS59316.1 TCEB3CL2 gene_id:100506888|Hs108|chr18 ( 546) 3716 381.7 1.2e-105
CCDS11931.1 TCEB3C gene_id:162699|Hs108|chr18 ( 546) 3714 381.5 1.4e-105
CCDS11932.1 TCEB3B gene_id:51224|Hs108|chr18 ( 753) 1420 154.4 4.4e-37
CCDS239.2 TCEB3 gene_id:6924|Hs108|chr1 ( 798) 869 99.9 1.2e-20
>>CCDS59316.1 TCEB3CL2 gene_id:100506888|Hs108|chr18 (546 aa)
initn: 3716 init1: 3716 opt: 3716 Z-score: 2010.0 bits: 381.7 E(32554): 1.2e-105
Smith-Waterman score: 3716; 99.6% identity (99.8% similar) in 546 aa overlap (1-546:1-546)
10 20 30 40 50 60
pF1KB9 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEAL
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VQESQSERLQAAVADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNNPDALGDVEGVPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNNPDALGDVEGVPY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SVLEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLR
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SALEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 DAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPGNGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPGNGEM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 EPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKVAPLMAKAIRDYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKVAPLMAKAIRDYK
490 500 510 520 530 540
pF1KB9 GRFSRR
::::::
CCDS59 GRFSRR
>>CCDS11931.1 TCEB3C gene_id:162699|Hs108|chr18 (546 aa)
initn: 3714 init1: 3714 opt: 3714 Z-score: 2008.9 bits: 381.5 E(32554): 1.4e-105
Smith-Waterman score: 3714; 99.6% identity (99.8% similar) in 546 aa overlap (1-546:1-546)
10 20 30 40 50 60
pF1KB9 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNNPDALGDVEGVPY
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAPALQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNNPDALGDVEGVPY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SVLEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLR
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLEPVLEGWTPDQLYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 DAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPGNGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPGNGEM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 EPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKVAPLMAKAIRDYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKVAPLMAKAIRDYK
490 500 510 520 530 540
pF1KB9 GRFSRR
::::::
CCDS11 GRFSRR
>>CCDS11932.1 TCEB3B gene_id:51224|Hs108|chr18 (753 aa)
initn: 3024 init1: 1420 opt: 1420 Z-score: 779.3 bits: 154.4 E(32554): 4.4e-37
Smith-Waterman score: 1871; 58.8% identity (62.0% similar) in 577 aa overlap (1-385:1-577)
10 20 30 40 50 60
pF1KB9 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::.:: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
::::::::::::::::::::::: : ::::::::::::::::::..::::::::::::::
CCDS11 HVGDFARDLAARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
:::::::::::::::::::::::::: ::::::::: ::.:::::: .: ::::::: :
CCDS11 SPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRM
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSR---------
:::::::.::.::::::.::::::::: ::::::::.:: ::::::::::
CCDS11 PEGPEPAAPGKQPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQ
190 200 210 220 230 240
pF1KB9 --------------GA--------------------------------------------
::
CCDS11 GDWHSPTLIREKSCGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEA
250 260 270 280 290 300
pF1KB9 ------------------------------------------------------------
CCDS11 PDSHQKRPQHSHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTS
310 320 330 340 350 360
pF1KB9 ------------------------------------------------------------
CCDS11 VSSLSEVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGT
370 380 390 400 410 420
240 250 260 270 280
pF1KB9 -----SAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAF
::.: :::::::::::::::::::::::::::::::::: :::::::::: ::
CCDS11 RESWDSAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDS
430 440 450 460 470 480
290 300 310 320 330 340
pF1KB9 EAMTSQANPEALSAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNN
..:::::.:::::.: ..::::::::::::::::::::::::::::::::::: .: :::
CCDS11 DSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNN
490 500 510 520 530 540
350 360 370 380 390 400
pF1KB9 PDALGDVEGVPYSVLEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQE
::::.:: ::: ::::::::: ::: :: .::: ::
CCDS11 PDALSDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQE
550 560 570 580 590 600
410 420 430 440 450 460
pF1KB9 HESWRELYLRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEK
CCDS11 NKTWREQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK
610 620 630 640 650 660
>--
initn: 776 init1: 574 opt: 750 Z-score: 420.7 bits: 88.1 E(32554): 4.1e-17
Smith-Waterman score: 750; 69.1% identity (82.9% similar) in 175 aa overlap (387-546:579-753)
360 370 380 390 400 410
pF1KB9 GVPYSVLEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELY
:::::: : ::.::::::::::...::: :
CCDS11 EVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQENKTWREQY
550 560 570 580 590 600
420 430 440 450 460 470
pF1KB9 LRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKSAGAADPG
::: :: ::::::.::.::::: :.:.::..:::::.::::::::.::::::::: :::
CCDS11 LRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEKSAGDADPE
610 620 630 640 650 660
480 490 500 510 520
pF1KB9 NGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGG---------------SSNRHAAPADKTR
:::..:: ::::::..::. ... :: :... :::.::::: :::
CCDS11 NGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEHAAPAAKTR
670 680 690 700 710 720
530 540
pF1KB9 KQAAKKVAPLMAKAIRDYKGRFSRR
::::::::::::::::::: :::::
CCDS11 KQAAKKVAPLMAKAIRDYKRRFSRR
730 740 750
>>CCDS239.2 TCEB3 gene_id:6924|Hs108|chr1 (798 aa)
initn: 1420 init1: 718 opt: 869 Z-score: 484.0 bits: 99.9 E(32554): 1.2e-20
Smith-Waterman score: 962; 38.8% identity (64.6% similar) in 492 aa overlap (82-546:314-798)
60 70 80 90 100 110
pF1KB9 TVKRLRKHQHVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWG
:. : . . ..: : .:...
CCDS23 KSDEKASVVSREKSHKALSKEENRRPPSGDNAREKPPSSGVKKEKDREGSSLKKK----C
290 300 310 320 330
120 130 140 150 160
pF1KB9 FPENATAPRSPSHSPEHRRTAR----RTPPGQQRPHPRSPSRE--PRAERKRPRMAPADS
.: . .: . ..:.:: . .. : . . . . :....: .
CCDS23 LPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGSNNLKTPE
340 350 360 370 380 390
170 180 190 200 210 220
pF1KB9 GPHRDPPTRTAPLPMPEGPEPAVPGE--QPGRG-HAHAAQGGPLLGQGCQGQPQGEAVGS
: . : . .:. : . : :: . ... . : . . .. :.:.
CCDS23 GKVKTNLDRKSLGSLPKVEETDMEDEFEQPTMSFESYLSYDQPRKKKKKIVKTSATALGD
400 410 420 430 440 450
230 240 250 260 270
pF1KB9 HS--KGHKSSRGA---SAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAW
.. :. ..: : :.:: : :....::. :::: : . ::. :. : :
CCDS23 KGLKKNDSKSTGKNLDSVQKLPKVNKTKSEK--PAGADLAKLRKVPD-VLPVLPDLPLPA
460 470 480 490 500 510
280 290 300 310 320 330
pF1KB9 MQANYDLLSAFEAMTS-QANPEALSAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPT
.:::: : ..: ..: : . .:.:.: .:::.: :::.:.:: :::::. : .. :
CCDS23 IQANYRPLPSLELISSFQPKRKAFSSPQEEEEAGFTGRRMNSKMQVYSGSKCAYLPKMMT
520 530 540 550 560 570
340 350 360 370 380 390
pF1KB9 LRQQCLRVPRNNPDALGDVEGVPYSVLEPVLEGWTPDQPYRTEKDNAALARETDELWRIH
:.:::.:: .:: :.. .: :::::::::::: :::: :: :. : .: .:::.::..:
CCDS23 LHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVH
580 590 600 610 620 630
400 410 420 430 440 450
pF1KB9 CLQDFKEEKPQEHESWRELYLRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVA
: .:::::.:.:.:::::.::::.:::::::::.: .:. :. :::.:::.:: ::::
CCDS23 CHRDFKEERPEEYESWREMYLRLQDAREQRLRVLTKNIQFAHANKPKGRQAKMAFVNSVA
640 650 660 670 680 690
460 470 480 490 500 510
pF1KB9 KTPYDASRRQEK--SAGAADPGNGEMEPAPKPAGSSQAP-SGLG---DGDGGSVSGGGSS
: : :. ::::: ..::: : . ...::: : :::.: :... . . . .: ..:
CCDS23 KPPRDVRRRQEKFGTGGAAVPEKIKIKPAPYPMGSSHASASSISFNPSPEEPAYDGPSTS
700 710 720 730 740 750
520 530 540
pF1KB9 NRHAAPADKT------RKQAAKKVAPLMAKAIRDYKGRFSRR
. : ::. .. :: ..::.::.:::.:. .:.:::::
CCDS23 SAHLAPVVSSTVSYDPRKPTVKKIAPMMAKTIKAFKNRFSRR
760 770 780 790
546 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:57:45 2016 done: Fri Nov 4 19:57:46 2016
Total Scan time: 4.240 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]