FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9860, 406 aa
  1>>>pF1KB9860 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3790+/-0.000821; mu= 6.5755+/- 0.050
 mean_var=277.4139+/-54.019, 0's: 0 Z-trim(118.3): 32  B-trim: 2 in 1/54
 Lambda= 0.077003
 statistics sampled from 19222 (19254) to 19222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.591), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS9036.1 CCER1 gene_id:196477|Hs108|chr12        ( 406) 2954 340.8 1.4e-93


>>CCDS9036.1 CCER1 gene_id:196477|Hs108|chr12             (406 aa)
 initn: 2954 init1: 2954 opt: 2954  Z-score: 1793.5  bits: 340.8 E(32554): 1.4e-93
Smith-Waterman score: 2954; 99.8% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB9 MTQTLDTREDPLNLGGGGGGGCGCGWAHSASLSSWSSCHRRRPGAPAYNRPHRYSPKTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MTQTLDTREDPLNLGGGGGGGCGCGWAHSASLSSWSSCHRRRPGAPAYNRPHRYSPKTEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GPPRKQPKQQHGPGFWFQPPVCSNWGCWGGPWRPPPPGFWKFPCPVQVFRVYGLYPLCFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS90 GPPRKQPKQQHGPGFWFQPPVCSNWGCWGGPWRPPPPGFWKFPCPVQVFRVYGLHPLCFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CCSCWSGSWNPGWVKPPGRKKRWGRRGRGLRHHPRHSYPRSPPADVSTLPRPVKLYEWRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 CCSCWSGSWNPGWVKPPGRKKRWGRRGRGLRHHPRHSYPRSPPADVSTLPRPVKLYEWRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PGMRAPPNTTQFIMNQIYEDMRQQEKVERQQEALRAQKATVSGEASPARSSGNDAPPGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 PGMRAPPNTTQFIMNQIYEDMRQQEKVERQQEALRAQKATVSGEASPARSSGNDAPPGGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 KETWGLQETLYGFVQNPSLAFSPNPEENQSLAPLLVEEEEEKKNDDEEEYDQEVCDAKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KETWGLQETLYGFVQNPSLAFSPNPEENQSLAPLLVEEEEEKKNDDEEEYDQEVCDAKEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SEEEEEVEDEEEEVEDEEEEEVEEAEYVEEGEEELEEEELEEEEEVLEENEQRGEEFHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SEEEEEVEDEEEEVEDEEEEEVEEAEYVEEGEEELEEEELEEEEEVLEENEQRGEEFHLP
              310       320       330       340       350       360

              370       380       390       400      
pF1KB9 LEMPLSIFVEAEEKRENFISCTFLNPEQIIPKVPQESLFMAQDFNC
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LEMPLSIFVEAEEKRENFISCTFLNPEQIIPKVPQESLFMAQDFNC
              370       380       390       400      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:51:03 2016 done: Fri Nov  4 19:51:04 2016
 Total Scan time:  3.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]