FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9857, 396 aa
  1>>>pF1KB9857 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4918+/-0.000892; mu= 7.7822+/- 0.054
 mean_var=126.3229+/-25.525, 0's: 0 Z-trim(110.1): 10  B-trim: 9 in 1/49
 Lambda= 0.114112
 statistics sampled from 11380 (11388) to 11380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS31660.1 DDI1 gene_id:414301|Hs108|chr11        ( 396) 2613 441.1 8.2e-124
CCDS30607.1 DDI2 gene_id:84301|Hs108|chr1          ( 399) 1878 320.1 2.2e-87


>>CCDS31660.1 DDI1 gene_id:414301|Hs108|chr11             (396 aa)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 2336.3  bits: 441.1 E(32554): 8.2e-124
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB9 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF
              310       320       330       340       350       360

              370       380       390      
pF1KB9 LPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH
       ::::::::::::::::::::::::::::::::::::
CCDS31 LPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH
              370       380       390      

>>CCDS30607.1 DDI2 gene_id:84301|Hs108|chr1               (399 aa)
 initn: 1898 init1: 1401 opt: 1878  Z-score: 1682.3  bits: 320.1 E(32554): 2.2e-87
Smith-Waterman score: 1878; 71.4% identity (88.4% similar) in 398 aa overlap (1-391:1-390)

               10        20        30        40        50        60
pF1KB9 MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCS
       ::.::::::::::::::::::. ::::.::..::: :: .:. : ::.. :: : ..: :
CCDS30 MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTP
       :.::::::::.:.: ::.:. :: : . :: ::.:::.:::::::: : ..:       :
CCDS30 LASYGLKDGDVVILRQKENADPRPPVQFPNLPRIDFSSIAVPGTSSPRQRQP-------P
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB9 AAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFS
       ..:.:.. . :: ... ::: .:::.:.:::.:::.::::::::::::::::::.:: ::
CCDS30 GTQQSHS-SPGEITSSPQGLDNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFS
           120        130       140       150       160       170  

              190       200       210       220       230       240
pF1KB9 QVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQ
       .::.:::...: :::::.::..:::.: ::::::::.::::::::::.::.:::::::::
CCDS30 RVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQ
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KB9 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIG
       :.::::::::::::.:::::::::::::::::::::::::::::::::.:::::::.:::
CCDS30 VVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIG
            240       250       260       270       280       290  

              310       320       330       340       350       360
pF1KB9 RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYF
       ::::::.::::::: :::::::.::::::::::::.:::::::::::::::::::.:: :
CCDS30 RVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTF
            300       310       320       330       340       350  

              370              380       390          
pF1KB9 LPEGELPLCSRMVSGQ-------DESSDKEITHSVMDSGRKEH    
       ::::::: :.:.. :        .: .:.:...... :         
CCDS30 LPEGELPECARLAYGAGREDVRPEEIADQELAEALQKSAEDAERQKP
            360       370       380       390         




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:49:26 2016 done: Fri Nov  4 19:49:26 2016
 Total Scan time:  2.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]