Result of FASTA (ccds) for
pF1KB9854
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9854, 389 aa
1>>>pF1KB9854 389 - 389 aa - 389 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6899+/-0.000876; mu= 15.0464+/- 0.053
mean_var=68.1756+/-13.397, 0's: 0 Z-trim(106.0): 13 B-trim: 0 in 0/50
Lambda= 0.155332
statistics sampled from 8729 (8733) to 8729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.268), width: 16
Scan time: 2.750
The best scores are: opt bits E(32554)
CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX ( 389) 2616 595.2 3.3e-170
CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6 ( 442) 1544 355.0 7.7e-98
CCDS896.1 FAM46C gene_id:54855|Hs108|chr1 ( 391) 1502 345.6 4.7e-95
CCDS294.2 FAM46B gene_id:115572|Hs108|chr1 ( 425) 1282 296.3 3.5e-80
>>CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX (389 aa)
initn: 2616 init1: 2616 opt: 2616 Z-score: 3169.2 bits: 595.2 E(32554): 3.3e-170
Smith-Waterman score: 2616; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEAR
310 320 330 340 350 360
370 380
pF1KB9 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
:::::::::::::::::::::::::::::
CCDS14 YPIYVIPEPPPVSFQPYHPLHFRGSNGMS
370 380
>>CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6 (442 aa)
initn: 1524 init1: 1034 opt: 1544 Z-score: 1870.0 bits: 355.0 E(32554): 7.7e-98
Smith-Waterman score: 1544; 62.9% identity (85.7% similar) in 364 aa overlap (9-372:66-427)
10 20 30
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEV
:.:.:: :: .:.:.:::::.:::::.:.
CCDS34 DFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLEL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 KPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQ
.:. :..::. .: . : :.:.:::::.::..: . .:..:::::.:: ..: :. :::
CCDS34 QPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQ
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB9 VVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLE
.:::.::::::::::. :.:::..: .:.:::::.::::: : :::::::::.:::.:
CCDS34 TVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVE
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB9 LKFVSSLRRQFEFSVDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHL
::::.::::::::::::::: :: .: :: .. .:. .:....::.:::::::. ::
CCDS34 LKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHL
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB9 QHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQK
.:.: ::.:::::::::::::.:::.::.:: .:::.:.::::::::::: : :::.
CCDS34 CNKIIATRNPEEIRGGGLLKYCNLLVRGFRPAS-DEIKTLQRYMCSRFFIDFSDIGEQQR
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB9 KIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNI
:.::::.:::.: ::.:::::::::::::::::..:::: :.::::.:..::.. :.
CCDS34 KLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNV
340 350 360 370 380 390
340 350 360 370 380
pF1KB9 LPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
.::. .:::.:::::: .:.: . : : . ::
CCDS34 IPNVANVTCYYQPAPY-VADANFSNYYIAQVQPVFTCQQQTYSTWLPCN
400 410 420 430 440
>>CCDS896.1 FAM46C gene_id:54855|Hs108|chr1 (391 aa)
initn: 1490 init1: 1465 opt: 1502 Z-score: 1820.0 bits: 345.6 E(32554): 4.7e-95
Smith-Waterman score: 1502; 59.6% identity (84.2% similar) in 374 aa overlap (4-377:12-384)
10 20 30 40 50
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLI
. :. :.:::: : .:: ::.::::.:::::.:. :::...:...:
CCDS89 MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 GQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFL
:: :.:.:::::.:...:.. ::.. ::::.:: : :: . :::.:.:.:: ::.::
CCDS89 EAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 PKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFS
:. :.: :.:: .:.::::::::::. : ::::::::..:::.:::::.:.:::::::
CCDS89 PEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 VDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIR
::::::.:: .: ::. .: .... .:.:..:::::::.::. :::..:: :..:::::
CCDS89 VDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 GGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEG
::::::: .:::. :.:. . :::.:::::::::::::: : :::.:.:.::.::: :
CCDS89 GGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 MTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPA
.:::::: :. ::::::::::..:::: :.::...::.::.: ::.:.. .:::.::::
CCDS89 RSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPA
310 320 330 340 350 360
360 370 380
pF1KB9 PYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
:: .... . : . .:: . :::
CCDS89 PY-VSDGNFSNYYVAHPPVTYSQPYPTWLPCN
370 380 390
>>CCDS294.2 FAM46B gene_id:115572|Hs108|chr1 (425 aa)
initn: 1227 init1: 1093 opt: 1282 Z-score: 1553.0 bits: 296.3 E(32554): 3.5e-80
Smith-Waterman score: 1282; 52.5% identity (79.0% similar) in 366 aa overlap (6-370:49-412)
10 20 30
pF1KB9 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPT
...:.: :: :: .:.: :::::.:::::
CCDS29 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 MEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNE
. :.:..:..::.. : ::. :...::.::.::..: ..:..:::::..: :.: ..
CCDS29 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB9 EFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGK
::..: .:: ::::::: :.. :..: .:.::::::::::. : ::::::::..::
CCDS29 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB9 NLELKFVSSLRRQFEFSVDSFQIVLDPMLEFYSDKNAKLTKESYPVVVAESMYGDFQEAM
:.:::::.:.:::::::.:::::.:: .: : . ... ... .:.:..::.:::: ::.
CCDS29 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB9 THLQHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEE
::.:..: ::.::::::::::::: :::.::.: .... :.:::::::::::: . :
CCDS29 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB9 QQKKIESYLHNHFIG-EGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLG
:.. .: ::. :: : .. .: :.::: ::::::::::..:::: : ::. .::..:.
CCDS29 QRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALA
320 330 340 350 360 370
340 350 360 370 380
pF1KB9 ELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
: . : . . . :. .. : :: : :
CCDS29 EQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTWLPCN
380 390 400 410 420
389 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:48:10 2016 done: Fri Nov 4 19:48:10 2016
Total Scan time: 2.750 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]