Result of FASTA (omim) for
pF1KB9853
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9853, 385 aa
1>>>pF1KB9853 385 - 385 aa - 385 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6530+/-0.000387; mu= 15.1976+/- 0.024
mean_var=76.2837+/-15.293, 0's: 0 Z-trim(111.9): 14 B-trim: 0 in 0/50
Lambda= 0.146845
statistics sampled from 20601 (20614) to 20601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.242), width: 16
Scan time: 8.130
The best scores are: opt bits E(85289)
XP_016875476 (OMIM: 616929) PREDICTED: transcripti ( 385) 2513 542.1 8.2e-154
NP_001028222 (OMIM: 616929) transcription terminat ( 385) 2513 542.1 8.2e-154
XP_016875474 (OMIM: 616929) PREDICTED: transcripti ( 385) 2513 542.1 8.2e-154
XP_011537069 (OMIM: 616929) PREDICTED: transcripti ( 385) 2513 542.1 8.2e-154
XP_016875475 (OMIM: 616929) PREDICTED: transcripti ( 385) 2513 542.1 8.2e-154
NP_079474 (OMIM: 616929) transcription termination ( 385) 2513 542.1 8.2e-154
XP_016868109 (OMIM: 602318) PREDICTED: transcripti ( 379) 515 118.8 2.1e-26
NP_001288063 (OMIM: 602318) transcription terminat ( 379) 515 118.8 2.1e-26
NP_001288064 (OMIM: 602318) transcription terminat ( 379) 515 118.8 2.1e-26
XP_005250650 (OMIM: 602318) PREDICTED: transcripti ( 399) 515 118.8 2.2e-26
XP_006716189 (OMIM: 602318) PREDICTED: transcripti ( 399) 515 118.8 2.2e-26
NP_008911 (OMIM: 602318) transcription termination ( 399) 515 118.8 2.2e-26
NP_001273572 (OMIM: 616930) transcription terminat ( 361) 164 44.4 0.0005
>>XP_016875476 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
XP_016 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>NP_001028222 (OMIM: 616929) transcription termination (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
NP_001 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>XP_016875474 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
XP_016 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>XP_011537069 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
XP_011 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>XP_016875475 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
XP_016 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>NP_079474 (OMIM: 616929) transcription termination fac (385 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2882.4 bits: 542.1 E(85289): 8.2e-154
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
310 320 330 340 350 360
370 380
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
:::::::::::::::::::::::::
NP_079 ANFGKIQAKKVRPLFNPVAPLNVEE
370 380
>>XP_016868109 (OMIM: 602318) PREDICTED: transcription t (379 aa)
initn: 557 init1: 282 opt: 515 Z-score: 594.9 bits: 118.8 E(85289): 2.1e-26
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:6-375)
10 20 30 40 50
pF1KB9 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-LACFTYTTDKQSSKENTRTVE
::.. .: .. : . : ... . ..: : . : ..::.. : : ..
XP_016 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKC--HNTDSEPLK-NEDLLK
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 KLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPT
.: .::: :. . :. . : ... .: ::.. ..:::. : :.::. .:
XP_016 NLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLL
.. . ::. . .. :.....:. ::::: ... : . :..:. .:: . :::
XP_016 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 TAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKET
: :: .: : .. :::::..:: . :..: .. .. :.. .:::::..: .: .
XP_016 TNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVRKIIFKNPFILIQSTKRVKAN
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 LEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN---AFKCTDHDLKQLVL
.:::. ...: :.: :. . ...: . : . :. .. ::.......::
XP_016 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 KCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKD
. : ... . ...... :..:.:::.:: :.: ::. . . .. ::..: ..: ..
XP_016 SYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLST
300 310 320 330 340 350
350 360 370 380
pF1KB9 GHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
... :. :::..::.. :.
XP_016 LNITLLSWSKKRYEAKLKKLSRFA
360 370
>>NP_001288063 (OMIM: 602318) transcription termination (379 aa)
initn: 557 init1: 282 opt: 515 Z-score: 594.9 bits: 118.8 E(85289): 2.1e-26
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:6-375)
10 20 30 40 50
pF1KB9 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-LACFTYTTDKQSSKENTRTVE
::.. .: .. : . : ... . ..: : . : ..::.. : : ..
NP_001 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKC--HNTDSEPLK-NEDLLK
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 KLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPT
.: .::: :. . :. . : ... .: ::.. ..:::. : :.::. .:
NP_001 NLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLL
.. . ::. . .. :.....:. ::::: ... : . :..:. .:: . :::
NP_001 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 TAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKET
: :: .: : .. :::::..:: . :..: .. .. :.. .:::::..: .: .
NP_001 TNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVRKIIFKNPFILIQSTKRVKAN
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 LEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN---AFKCTDHDLKQLVL
.:::. ...: :.: :. . ...: . : . :. .. ::.......::
NP_001 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 KCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKD
. : ... . ...... :..:.:::.:: :.: ::. . . .. ::..: ..: ..
NP_001 SYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLST
300 310 320 330 340 350
350 360 370 380
pF1KB9 GHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
... :. :::..::.. :.
NP_001 LNITLLSWSKKRYEAKLKKLSRFA
360 370
>>NP_001288064 (OMIM: 602318) transcription termination (379 aa)
initn: 557 init1: 282 opt: 515 Z-score: 594.9 bits: 118.8 E(85289): 2.1e-26
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:6-375)
10 20 30 40 50
pF1KB9 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-LACFTYTTDKQSSKENTRTVE
::.. .: .. : . : ... . ..: : . : ..::.. : : ..
NP_001 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKC--HNTDSEPLK-NEDLLK
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 KLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPT
.: .::: :. . :. . : ... .: ::.. ..:::. : :.::. .:
NP_001 NLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLL
.. . ::. . .. :.....:. ::::: ... : . :..:. .:: . :::
NP_001 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 TAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKET
: :: .: : .. :::::..:: . :..: .. .. :.. .:::::..: .: .
NP_001 TNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVRKIIFKNPFILIQSTKRVKAN
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 LEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN---AFKCTDHDLKQLVL
.:::. ...: :.: :. . ...: . : . :. .. ::.......::
NP_001 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 KCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKD
. : ... . ...... :..:.:::.:: :.: ::. . . .. ::..: ..: ..
NP_001 SYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLST
300 310 320 330 340 350
350 360 370 380
pF1KB9 GHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
... :. :::..::.. :.
NP_001 LNITLLSWSKKRYEAKLKKLSRFA
360 370
>>XP_005250650 (OMIM: 602318) PREDICTED: transcription t (399 aa)
initn: 557 init1: 282 opt: 515 Z-score: 594.6 bits: 118.8 E(85289): 2.2e-26
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:26-395)
10 20 30
pF1KB9 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
::.. .: .. : . : ... . ..: : .
XP_005 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
: ..::.. : : ...: .::: :. . :. . : ... .: ::.
XP_005 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
70 80 90 100 110
100 110 120 130 140 150
pF1KB9 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
. ..:::. : :.::. .: .. . ::. . .. :.....:. ::::: ... : .
XP_005 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
:..:. .:: . :::: :: .: : .. :::::..:: . :..: .. ..
XP_005 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
180 190 200 210 220 230
220 230 240 250 260
pF1KB9 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
:.. .:::::..: .: ..:::. ...: :.: :. . ...: . : .
XP_005 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB9 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
:. .. ::.......::. : ... . ...... :..:.:::.:: :.: ::. .
XP_005 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB9 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
. .. ::..: ..: .. ... :. :::..::.. :.
XP_005 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
360 370 380 390
385 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:47:35 2016 done: Fri Nov 4 19:47:36 2016
Total Scan time: 8.130 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]