FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9853, 385 aa
  1>>>pF1KB9853 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9495+/-0.000901; mu= 13.4721+/- 0.054
 mean_var=67.4098+/-13.660, 0's: 0 Z-trim(105.7): 24  B-trim: 190 in 1/47
 Lambda= 0.156211
 statistics sampled from 8540 (8548) to 8540 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS9111.1 MTERF2 gene_id:80298|Hs108|chr12        ( 385) 2513 575.3 3.2e-164
CCDS75629.1 MTERF1 gene_id:7978|Hs108|chr7         ( 379)  515 125.0 1.1e-28
CCDS5621.1 MTERF1 gene_id:7978|Hs108|chr7          ( 399)  515 125.0 1.2e-28


>>CCDS9111.1 MTERF2 gene_id:80298|Hs108|chr12             (385 aa)
 initn: 2513 init1: 2513 opt: 2513  Z-score: 3061.7  bits: 575.3 E(32554): 3.2e-164
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KB9 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
              310       320       330       340       350       360

              370       380     
pF1KB9 ANFGKIQAKKVRPLFNPVAPLNVEE
       :::::::::::::::::::::::::
CCDS91 ANFGKIQAKKVRPLFNPVAPLNVEE
              370       380     

>>CCDS75629.1 MTERF1 gene_id:7978|Hs108|chr7              (379 aa)
 initn: 557 init1: 282 opt: 515  Z-score: 628.2  bits: 125.0 E(32554): 1.1e-28
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:6-375)

                      10          20         30        40        50
pF1KB9     MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-LACFTYTTDKQSSKENTRTVE
            ::..   .: .. : .  :  ... .  ..: : . :  ..::..  : :   ..
CCDS75 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKC--HNTDSEPLK-NEDLLK
               10        20        30        40          50        

               60        70        80        90       100       110
pF1KB9 KLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPT
       .:   .:::   :. .  :. .  :  ...  .:   ::.. ..:::. : :.::. .: 
CCDS75 NLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE
        60        70        80        90       100       110       

              120       130       140       150       160       170
pF1KB9 AVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLL
        .. .  ::. .  .. :.....:. :::::  ... : . :..:.  .::    . :::
CCDS75 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLL
       120       130       140       150       160       170       

              180       190       200       210       220       230
pF1KB9 TAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKET
       : :: .: : .. :::::..:: . :..: ..     .. :.. .:::::..:   .: .
CCDS75 TNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVRKIIFKNPFILIQSTKRVKAN
       180       190       200       210         220       230     

               240       250       260       270          280      
pF1KB9 LEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN---AFKCTDHDLKQLVL
       .:::.   ...: :.: :.    . ...:     . : .  :.   .. ::.......::
CCDS75 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL
         240       250       260       270       280       290     

        290       300       310       320       330       340      
pF1KB9 KCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKD
       . : ... .   ...... :..:.:::.:: :.: ::. . . .. ::..: ..:  .. 
CCDS75 SYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLST
         300       310       320       330       340       350     

        350       360       370       380     
pF1KB9 GHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
        ... :. :::..::.. :.                   
CCDS75 LNITLLSWSKKRYEAKLKKLSRFA               
         360       370                        

>>CCDS5621.1 MTERF1 gene_id:7978|Hs108|chr7               (399 aa)
 initn: 557 init1: 282 opt: 515  Z-score: 627.9  bits: 125.0 E(32554): 1.2e-28
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (2-366:26-395)

                                          10          20         30
pF1KB9                         MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
                                ::..   .: .. : .  :  ... .  ..: : .
CCDS56 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KB9 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
        :  ..::..  : :   ...:   .:::   :. .  :. .  :  ...  .:   ::.
CCDS56 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
                 70         80        90       100       110       

              100       110       120       130       140       150
pF1KB9 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
       . ..:::. : :.::. .:  .. .  ::. .  .. :.....:. :::::  ... : .
CCDS56 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
       120       130       140       150       160       170       

              160       170       180       190       200       210
pF1KB9 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
        :..:.  .::    . :::: :: .: : .. :::::..:: . :..: ..     .. 
CCDS56 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
       180       190       200       210       220       230       

              220       230        240       250       260         
pF1KB9 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
       :.. .:::::..:   .: ..:::.   ...: :.: :.    . ...:     . : . 
CCDS56 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
         240       250       260       270       280       290     

     270          280       290       300       310       320      
pF1KB9 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
        :.   .. ::.......::. : ... .   ...... :..:.:::.:: :.: ::. .
CCDS56 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
         300       310       320       330       340       350     

        330       340       350       360       370       380     
pF1KB9 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
        . .. ::..: ..:  ..  ... :. :::..::.. :.                   
CCDS56 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA               
         360       370       380       390                        




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:47:34 2016 done: Fri Nov  4 19:47:34 2016
 Total Scan time:  2.790 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]