FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9844, 372 aa
  1>>>pF1KB9844 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0455+/-0.00101; mu= 4.6820+/- 0.059
 mean_var=223.3834+/-48.526, 0's: 0 Z-trim(112.4): 834  B-trim: 734 in 1/49
 Lambda= 0.085812
 statistics sampled from 12216 (13174) to 12216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.405), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS14202.1 YY2 gene_id:404281|Hs108|chrX          ( 372) 2559 329.5 2.8e-90
CCDS9957.1 YY1 gene_id:7528|Hs108|chr14            ( 414) 1195 160.7 2.1e-39
CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4         ( 310)  849 117.8 1.3e-26


>>CCDS14202.1 YY2 gene_id:404281|Hs108|chrX               (372 aa)
 initn: 2559 init1: 2559 opt: 2559  Z-score: 1734.2  bits: 329.5 E(32554): 2.8e-90
Smith-Waterman score: 2559; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB9 MASNEDFSITQDLEIPADIVELHDINVEPLPMEDIPTESVQYEDVDGNWIYGGHNHPPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MASNEDFSITQDLEIPADIVELHDINVEPLPMEDIPTESVQYEDVDGNWIYGGHNHPPLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VLQPLFTNTGYGDHDQEMLMLQTQEEVVGYCDSDNQLGNDLEDQLALPDSIEDEHFQMTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VLQPLFTNTGYGDHDQEMLMLQTQEEVVGYCDSDNQLGNDLEDQLALPDSIEDEHFQMTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ASLSASAASTSTSTQSRSKKPSKKPSGKSATSTEANPAGSSSSLGTRKWEQKQMQVKTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASLSASAASTSTSTQSRSKKPSKKPSGKSATSTEANPAGSSSSLGTRKWEQKQMQVKTLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GEFSVTMWSPNDNNDQGAVGEGQAENPPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GEFSVTMWSPNDNNDQGAVGEGQAENPPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VKPKRSKGEPPKTVPCSYSGCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKPKRSKGEPPKTVPCSYSGCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKT
              310       320       330       340       350       360

              370  
pF1KB9 HILTHVKTKNNP
       ::::::::::::
CCDS14 HILTHVKTKNNP
              370  

>>CCDS9957.1 YY1 gene_id:7528|Hs108|chr14                 (414 aa)
 initn: 1137 init1: 769 opt: 1195  Z-score: 821.0  bits: 160.7 E(32554): 2.1e-39
Smith-Waterman score: 1419; 56.8% identity (76.7% similar) in 403 aa overlap (10-371:11-413)

                10        20        30        40               50  
pF1KB9  MASNEDFSITQDLEIPADIVELHDINVEPLPMEDIPTESV---QYEDVD----GNWIYG
                 :.  :.::.:::::.:.:: .:.: : :  :   . :: :    :.  .:
CCDS99 MASGDTLYIATDGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHG
               10        20        30        40        50        60

                             60        70         80        90     
pF1KB9 G----------------HNHPPLMVLQPLFTNTGYG-DHDQEMLMLQTQEEVVGYCDSDN
       :                :.:::...:::: :.      : ::....::.:::::  :::.
CCDS99 GGGGHGHAGHHHHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDSDG
               70        80        90       100       110       120

         100        110           120           130       140      
pF1KB9 QLGND-LEDQLALPDSI----EDEHFQMTLASLSASAAS----TSTSTQSRSKKPSKKPS
         ..: .:::. .:       .:.....::....:.. :    .:.:  .: :: . : :
CCDS99 LRAEDGFEDQILIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGGSSSSGGGRVKKGGGKKS
              130       140       150       160       170       180

         150       160        170       180       190         200  
pF1KB9 GK-SATSTEANPAGSSSSL-GTRKWEQKQMQVKTLEGEFSVTMWSPNDNND--QGAVGEG
       :: :  :  :. ::....  :..::::::.:.::::::::::::: ....:  . .: : 
CCDS99 GKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDHETVVEE
              190       200       210       220       230       240

               210       220       230       240        250        
pF1KB9 Q--AEN-PPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTKVKPKRSK-GEPPKTVPCSY
       :  .:: :::::::. ::::::::.::::::::::::::...::.. :  . :.:. : .
CCDS99 QIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPH
              250       260       270       280       290       300

      260       270       280       290       300       310        
pF1KB9 SGCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRRHQLVHTGEKPFQCTFEGC
       .:: ::::: .::::::: :::::::::::::::.:::::.:::::::::::::::::::
CCDS99 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC
              310       320       330       340       350       360

      320       330       340       350       360       370  
pF1KB9 GKRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKTHILTHVKTKNNP
       :::::::::::::.::::::.:.::::: ::.:::::::::.:::::.:.::: 
CCDS99 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
              370       380       390       400       410    

>>CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4              (310 aa)
 initn: 1051 init1: 633 opt: 849  Z-score: 591.1  bits: 117.8 E(32554): 1.3e-26
Smith-Waterman score: 849; 62.4% identity (80.2% similar) in 202 aa overlap (171-371:108-305)

              150       160       170       180       190       200
pF1KB9 PSKKPSGKSATSTEANPAGSSSSLGTRKWEQKQMQVKTLEGEFSVTMWSPNDNNDQGAVG
                                     :: .....::  .     . . .  :  ::
CCDS38 RGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSLEYMKKGVKKELPQKIVG
        80        90       100       110       120       130       

              210       220       230       240        250         
pF1KB9 EGQAENPPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTKVKPKRSKG-EPPKTVPCSYS
       :    :  .::::. ::::::::.::::::::::::::.. ::  .:  .  ... :  :
CCDS38 E----NSLEYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINKEYDSLSAIACPQS
           140       150       160       170       180       190   

     260       270       280       290       300       310         
pF1KB9 GCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRRHQLVHTGEKPFQCTFEGCG
       :: . .:. ::.:::: ::::: ::::::::::.:::::.:: :::::::::.:::::::
CCDS38 GCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHTGEKPFRCTFEGCG
           200       210       220       230       240       250   

     320       330       340       350       360       370      
pF1KB9 KRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKTHILTHVKTKNNP    
       ::::::::::::.:::::.: :::::. :::.: ::.:::.:::::..:..:     
CCDS38 KRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHANTNKNEQEGK
           260       270       280       290       300       310




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:41:28 2016 done: Fri Nov  4 19:41:28 2016
 Total Scan time:  3.110 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]