FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9827, 325 aa
  1>>>pF1KB9827 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7167+/-0.00109; mu= 1.6761+/- 0.065
 mean_var=233.0370+/-46.765, 0's: 0 Z-trim(110.1): 22  B-trim: 100 in 1/52
 Lambda= 0.084016
 statistics sampled from 11324 (11335) to 11324 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS4487.1 FAM50B gene_id:26240|Hs108|chr6         ( 325) 2142 272.4 3.5e-73
CCDS14751.1 FAM50A gene_id:9130|Hs108|chrX         ( 339) 1158 153.1 2.9e-37


>>CCDS4487.1 FAM50B gene_id:26240|Hs108|chr6              (325 aa)
 initn: 2142 init1: 2142 opt: 2142  Z-score: 1427.3  bits: 272.4 E(32554): 3.5e-73
Smith-Waterman score: 2142; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
              250       260       270       280       290       300

              310       320     
pF1KB9 NKHIFPASRWEAYDPEKKWDKYTIR
       :::::::::::::::::::::::::
CCDS44 NKHIFPASRWEAYDPEKKWDKYTIR
              310       320     

>>CCDS14751.1 FAM50A gene_id:9130|Hs108|chrX              (339 aa)
 initn: 1726 init1: 1142 opt: 1158  Z-score: 782.4  bits: 153.1 E(32554): 2.9e-37
Smith-Waterman score: 1700; 74.3% identity (90.3% similar) in 339 aa overlap (1-325:1-339)

               10        20        30        40        50        60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
       ::::::.  ::::::::.::::.:::::: .:::::::.:.::..::.::::::::::::
CCDS14 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
       :::::::::::::::.:::::.:::.::::... .: ... :. ::.:...: ::::: :
CCDS14 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
               70        80        90       100       110       120

              130                     140       150       160      
pF1KB9 SFALDDLDDQADAAE--------------ARRAGNLGKNPDVDTSFLPDRDREEEENRLR
       ::.:.. .. ..  :              . .  .:::::::::::::::::::::::::
CCDS14 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB9 EELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLE
       :::::::::..::.:.::.:.::::::::::::::..:::::.::::.:::. ::::: :
CCDS14 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KB9 LRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDE
       ::::::::::.::::::.::.:.:::::...:::::::::.::::::::::::::.::::
CCDS14 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
              250       260       270       280       290       300

        290       300       310       320     
pF1KB9 SHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTIR
       ::::::::::::::::::::::::: :::::::::::::
CCDS14 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
              310       320       330         




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:31:01 2016 done: Fri Nov  4 19:31:01 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]