Result of FASTA (omim) for
pF1KB9821
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9821, 312 aa
1>>>pF1KB9821 312 - 312 aa - 312 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3493+/-0.000548; mu= 4.2649+/- 0.035
mean_var=407.9582+/-83.863, 0's: 0 Z-trim(118.9): 192 B-trim: 1815 in 2/54
Lambda= 0.063499
statistics sampled from 32078 (32337) to 32078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.379), width: 16
Scan time: 5.910
The best scores are: opt bits E(85289)
NP_000418 (OMIM: 152445,604117) loricrin [Homo sap ( 312) 2298 224.5 2.1e-58
NP_000217 (OMIM: 144200,607606) keratin, type I cy ( 623) 467 57.3 9.5e-08
XP_005257400 (OMIM: 113800,148080,607602,609165) P ( 624) 458 56.4 1.7e-07
NP_000412 (OMIM: 113800,148080,607602,609165) kera ( 584) 456 56.2 1.9e-07
NP_001005922 (OMIM: 148022) keratin-associated pro ( 278) 449 55.1 2e-07
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 434 53.8 5.5e-07
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 434 54.1 6.9e-07
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 434 54.2 7.5e-07
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 434 54.2 7.5e-07
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 415 52.2 2e-06
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 415 52.2 2e-06
NP_001014364 (OMIM: 616284) filaggrin-2 [Homo sapi (2391) 407 52.7 8.8e-06
NP_006112 (OMIM: 113800,139350,144200,146590,60096 ( 644) 393 50.5 1.1e-05
NP_001009931 (OMIM: 616293) hornerin [Homo sapiens (2850) 402 52.3 1.3e-05
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 383 49.2 1.5e-05
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 383 49.2 1.5e-05
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 383 49.2 1.5e-05
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 383 49.2 1.5e-05
NP_775882 (OMIM: 616142) protein FAM98B [Homo sapi ( 433) 384 49.4 1.5e-05
NP_000414 (OMIM: 146800,600194) keratin, type II c ( 639) 370 48.4 4.6e-05
XP_011544083 (OMIM: 137070,608030,614782) PREDICTE ( 524) 352 46.6 0.00013
NP_001164408 (OMIM: 137070,608030,614782) RNA-bind ( 522) 347 46.2 0.00018
NP_001164105 (OMIM: 137070,608030,614782) RNA-bind ( 525) 346 46.1 0.00019
NP_004951 (OMIM: 137070,608030,614782) RNA-binding ( 526) 346 46.1 0.00019
XP_011507833 (OMIM: 616284) PREDICTED: filaggrin-2 (2239) 350 47.4 0.00032
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 332 44.4 0.00035
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 318 43.2 0.00089
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 318 43.2 0.00089
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 318 43.2 0.00089
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 318 43.2 0.00091
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 318 43.2 0.00091
NP_476429 (OMIM: 122100,148043) keratin, type II c ( 628) 315 43.4 0.0015
NP_001258112 (OMIM: 300132) trophinin isoform 6 [H ( 962) 310 43.2 0.0026
NP_001258113 (OMIM: 300132) trophinin isoform 7 [H (1034) 310 43.2 0.0027
XP_011529116 (OMIM: 300132) PREDICTED: trophinin i (1387) 310 43.4 0.0031
XP_016885257 (OMIM: 300132) PREDICTED: trophinin i (1387) 310 43.4 0.0031
NP_001034794 (OMIM: 300132) trophinin isoform 5 [H (1431) 310 43.5 0.0032
XP_011529114 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_016885256 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_011529111 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_011529110 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_011529115 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_011529113 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_006724663 (OMIM: 300132) PREDICTED: trophinin i (1431) 310 43.5 0.0032
XP_016882254 (OMIM: 603182) PREDICTED: interleukin ( 563) 299 41.8 0.0039
XP_011526289 (OMIM: 603182) PREDICTED: interleukin ( 563) 299 41.8 0.0039
XP_016882253 (OMIM: 603182) PREDICTED: interleukin ( 633) 299 41.9 0.0041
NP_002705 (OMIM: 603771) serine/threonine-protein ( 940) 302 42.4 0.0042
XP_011513024 (OMIM: 603771) PREDICTED: serine/thre ( 940) 302 42.4 0.0042
XP_016866484 (OMIM: 603771) PREDICTED: serine/thre ( 940) 302 42.4 0.0042
>>NP_000418 (OMIM: 152445,604117) loricrin [Homo sapiens (312 aa)
initn: 2298 init1: 2298 opt: 2298 Z-score: 1169.4 bits: 224.5 E(85289): 2.1e-58
Smith-Waterman score: 2298; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 FSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQ
250 260 270 280 290 300
310
pF1KB9 TQQKQAPTWPSK
::::::::::::
NP_000 TQQKQAPTWPSK
310
>>NP_000217 (OMIM: 144200,607606) keratin, type I cytosk (623 aa)
initn: 1048 init1: 393 opt: 467 Z-score: 260.1 bits: 57.3 E(85289): 9.5e-08
Smith-Waterman score: 489; 53.5% identity (67.4% similar) in 187 aa overlap (21-205:460-618)
10 20 30 40 50
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSG
:: .::.: :. : ::::: : : :
NP_000 IECQNQEYSLLLSIKMRLEKEIETYHNLLEGGQEDFESSGAGKIGLGGRGGSGG-SYGRG
430 440 450 460 470 480
60 70 80 90 100 110
pF1KB9 CGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGG
: :: :::. :::.:::: ::: .: :::::: :::..:::::: :: :
NP_000 ---SRGG--SGGSYGGGGSGGGYGGG-SGSRGGSGGSY---GGGSGSGGGSG----GGYG
490 500 510 520 530
120 130 140 150 160 170
pF1KB9 SGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSS
.: .::: :::..: :.:.::. ::::: ...:::..: . : :: ::::
NP_000 GG----SGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGS---GSRGG--SGGSH
540 550 560 570 580
180 190 200 210 220
pF1KB9 GGGSGCFSSGGGGGSVCGYSGG--GSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGG
::::: :. : .::: :.:: .:: ::: .::::
NP_000 GGGSG-FG-GESGGS---YGGGEEASGSGGGYGGGSGKSSHS
590 600 610 620
230 240 250 260 270 280
pF1KB9 SSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGG
>--
initn: 858 init1: 320 opt: 370 Z-score: 212.0 bits: 48.4 E(85289): 4.5e-05
Smith-Waterman score: 387; 53.1% identity (68.7% similar) in 147 aa overlap (29-171:14-147)
10 20 30 40 50 60
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYS
::::: : .:.::: :: : . :::::
NP_000 MSCRQFSSSYLSRSGGGGGGGLGSGGSIR-SSYSRFSSSGGGG--
10 20 30 40
70 80 90 100 110 120
pF1KB9 GGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG
::: ..::: :::.. :: :.::: :: ::::.:: :. :: ::: : : : ::
NP_000 GGGRFSSSSGYGGGSS-RVCGRGGGGSFGYSYGGGSGGGFSA--SSLGGGFGGGSRGFGG
50 60 70 80 90
130 140 150 160 170
pF1KB9 SSGGG---SGCFSSGGGGSSGGG-SGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGC
.:::: :: :..: ::.:::: .: ..:: :::.: .:: ..::..:
NP_000 ASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGG-------FGGGAGGGDGGILTAN
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB9 FSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSG
NP_000 EKSTMQELNSRLASYLDKVQALEEANNDLENKIQDWYDKKGPAAIQKNYSPYYNTIDDLK
160 170 180 190 200 210
>>XP_005257400 (OMIM: 113800,148080,607602,609165) PREDI (624 aa)
initn: 1402 init1: 394 opt: 458 Z-score: 255.6 bits: 56.4 E(85289): 1.7e-07
Smith-Waterman score: 466; 62.2% identity (73.3% similar) in 135 aa overlap (19-152:458-577)
10 20 30 40
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSG
.::::: :::: ::: .:::.:::::::
XP_005 QNTEYQQLLDIKIRLENEIQTYRSLLEGEGSSGGGGRGGGSFGGG---YGGGSSGGGSSG
430 440 450 460 470 480
50 60 70 80 90 100
pF1KB9 SGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGG-GGSSGGGSGCFSSG
.: : .: :: :::: ::::::::..:: : ::::. ::: ::::.:: : :::
XP_005 GGHG-GGHGGSSGGGYGGGSSGGGSSGG--GYGGGSS-----SGGHGGSSSGGYGGGSSG
490 500 510 520 530
110 120 130 140 150 160
pF1KB9 GGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSG
:::.: :::::::::. .. :::::.:: :::. : :
XP_005 GGGGGY----GGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPRSAETSWDTN
540 550 560 570 580 590
170 180 190 200 210 220
pF1KB9 GSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGG
XP_005 KTRVIKTIIEEVAPDGRVLSSMVESETKKHYY
600 610 620
>--
initn: 296 init1: 296 opt: 382 Z-score: 218.0 bits: 49.5 E(85289): 2.1e-05
Smith-Waterman score: 397; 48.8% identity (69.8% similar) in 162 aa overlap (59-215:5-149)
30 40 50 60 70 80
pF1KB9 SGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSG-GS
::.. ..: .:::::: ::::::.: .:
XP_005 MSVRYSSSKHYSSSRSGGGGGG-GGCGGGGGVSS
10 20 30
90 100 110 120 130 140
pF1KB9 VKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSG
.. :.. :: ::: ::::: ..: :: : :::: ::: :::::: .: . :
XP_005 LRISSSKGSLGGG---FSSGGFSGGSFSRG---SSGG--GCF----GGSSGGYGGLGGFG
40 50 60 70 80
150 160 170 180 190 200
pF1KB9 GGGFSGQAVQCQ---SYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCG-GGSSGG
::.: :. . . ::::. .::: :::: :..:. ::. :..::: : : ::. ::
XP_005 GGSFRGSYGSSSFGGSYGGIFGGGSFGGGS--FGGGSFGGG--GFGGGGFGGGFGGGFGG
90 100 110 120 130
210 220 230 240 250 260
pF1KB9 SGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGC
.:. ....::
XP_005 DGGLLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYS
140 150 160 170 180 190
>>NP_000412 (OMIM: 113800,148080,607602,609165) keratin, (584 aa)
initn: 1698 init1: 394 opt: 456 Z-score: 254.9 bits: 56.2 E(85289): 1.9e-07
Smith-Waterman score: 466; 62.2% identity (73.3% similar) in 135 aa overlap (19-152:458-577)
10 20 30 40
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSG
.::::: :::: ::: .:::.:::::::
NP_000 QNTEYQQLLDIKIRLENEIQTYRSLLEGEGSSGGGGRGGGSFGGG---YGGGSSGGGSSG
430 440 450 460 470 480
50 60 70 80 90 100
pF1KB9 SGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGG-GGSSGGGSGCFSSG
.: : .: :: :::: ::::::::..:: : ::::. ::: ::::.:: : :::
NP_000 GGHG-GGHGGSSGGGYGGGSSGGGSSGG--GYGGGSS-----SGGHGGSSSGGYGGGSSG
490 500 510 520 530
110 120 130 140 150 160
pF1KB9 GGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSG
:::.: :::::::::. .. :::::.:: :::. : :
NP_000 GGGGGY----GGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPRY
540 550 560 570 580
170 180 190 200 210 220
pF1KB9 GSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGG
>--
initn: 293 init1: 293 opt: 384 Z-score: 219.2 bits: 49.6 E(85289): 1.8e-05
Smith-Waterman score: 396; 49.4% identity (69.1% similar) in 162 aa overlap (59-215:5-149)
30 40 50 60 70 80
pF1KB9 SGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSG-GS
::.. ..: .:::::: ::::::.: .:
NP_000 MSVRYSSSKHYSSSRSGGGGGG-GGCGGGGGVSS
10 20 30
90 100 110 120 130 140
pF1KB9 VKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSG
.. :.. :: ::: ::::: ..: :: : :::: ::: :::::: .: . :
NP_000 LRISSSKGSLGGG---FSSGGFSGGSFSRG---SSGG--GCF----GGSSGGYGGLGGFG
40 50 60 70 80
150 160 170 180 190 200
pF1KB9 GGGFSGQAVQCQSYGGVSSGGSSGGGS---GCFSSGGGGGSVCGYSGGGSGCG-GGSSGG
::.: : . .:.:: : ::: :::: : :..:. ::. :..::: : : ::. ::
NP_000 GGSFRG-SYGSSSFGG-SYGGSFGGGSFGGGSFGGGSFGGG--GFGGGGFGGGFGGGFGG
90 100 110 120 130
210 220 230 240 250 260
pF1KB9 SGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGC
.:. ....::
NP_000 DGGLLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYS
140 150 160 170 180 190
>>NP_001005922 (OMIM: 148022) keratin-associated protein (278 aa)
initn: 923 init1: 295 opt: 449 Z-score: 254.5 bits: 55.1 E(85289): 2e-07
Smith-Waterman score: 518; 44.2% identity (56.2% similar) in 251 aa overlap (51-298:4-213)
30 40 50 60 70 80
pF1KB9 GGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGC
:: ::: : : ::::.: :: :.: :::
NP_001 MGCCGCSGGCGSSCGGCGSGC--GGCGSGCGGC
10 20 30
90 100 110 120 130 140
pF1KB9 GGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGG
:.: ::: ::: : . : . :: : .:: :::: :.::
NP_001 GSGCGGS-------GSSCCVPVCCCKP---VCCRVPTCSCSSCGKGGCGSSGG--SKGG-
40 50 60 70
150 160 170 180 190
pF1KB9 SGCFSSGGGGFSGQAVQCQSYGGVSS-GGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGG
: : :: :. :: .: :::.:: ..: .: :: :: :: : :: ::.:
NP_001 --CGSCGG---------CK--GGCGSCGGSKGGCGSCGGSKGGCGS-CGGSKGG--CGSG
80 90 100 110 120
200 210 220 230 240 250
pF1KB9 SSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGI
:: ::. . : :. . .: : :: :. :: : :. :: :::...:
NP_001 C-GGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGC--SKGACGS--CGGSKGGC
130 140 150 160 170
260 270 280 290 300 310
pF1KB9 GS--GCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPTWPSK
:: :: .:: . :::.. :: ::. :: ::: :::.:
NP_001 GSCGGC--KGGCGSCGGSK---GGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGS
180 190 200 210 220 230
NP_001 SCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
240 250 260 270
>>XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA-bin (323 aa)
initn: 1112 init1: 331 opt: 434 Z-score: 246.4 bits: 53.8 E(85289): 5.5e-07
Smith-Waterman score: 438; 39.1% identity (50.4% similar) in 258 aa overlap (4-258:109-309)
10 20 30
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGG
: ..: :. . ::: : : ::
XP_016 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS----RPSGGDFRGRGYGGER
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB9 CGFFGGGGSGGGSSGSGCGYSGGGGYSGG-GCGGGSSGGGGGGGIGG--CGGGSGGSVKY
:. : :: :: .: : : .::::.: . ::: :: .::: :: ::: ::. .
XP_016 -GYRGRGGRGGDRGGYG-GDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD-RG
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB9 SGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGG
.: ::. ::: : .. ::: : .: ::. ::: : : :. :: : ... ::
XP_016 GGYGGDRGGGYG--GDRGGGYGGDRGGYGGDRGGGYG----GDRGGYGGDRGGYGGDRGG
200 210 220 230 240
160 170 180 190 200 210
pF1KB9 FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVS
. ::. :: .: : :: ::. ::::: :: :::
XP_016 Y---------------GGDRGGYGGDRSRGGYGGD----RGGGSGYGGDRSGG-------
250 260 270
220 230 240 250 260 270
pF1KB9 SQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGS
::: :::: .: : :: ::. : ::. :
XP_016 --------------YGGDRSGGGYGGDRG----GGYGGDRGGYGGKMGGRNDYRNDQRNR
280 290 300 310 320
280 290 300 310
pF1KB9 VCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPTWPSK
XP_016 PY
>>XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA-bin (501 aa)
initn: 1112 init1: 331 opt: 434 Z-score: 244.6 bits: 54.1 E(85289): 6.9e-07
Smith-Waterman score: 438; 39.1% identity (50.4% similar) in 258 aa overlap (4-258:287-487)
10 20 30
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGG
: ..: :. . ::: : : ::
XP_011 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS----RPSGGDFRGRGYGGER
260 270 280 290 300 310
40 50 60 70 80 90
pF1KB9 CGFFGGGGSGGGSSGSGCGYSGGGGYSGG-GCGGGSSGGGGGGGIGG--CGGGSGGSVKY
:. : :: :: .: : : .::::.: . ::: :: .::: :: ::: ::. .
XP_011 -GYRGRGGRGGDRGGYG-GDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD-RG
320 330 340 350 360
100 110 120 130 140 150
pF1KB9 SGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGG
.: ::. ::: : .. ::: : .: ::. ::: : : :. :: : ... ::
XP_011 GGYGGDRGGGYG--GDRGGGYGGDRGGYGGDRGGGYG----GDRGGYGGDRGGYGGDRGG
370 380 390 400 410 420
160 170 180 190 200 210
pF1KB9 FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVS
. ::. :: .: : :: ::. ::::: :: :::
XP_011 Y---------------GGDRGGYGGDRSRGGYGGD----RGGGSGYGGDRSGG-------
430 440 450
220 230 240 250 260 270
pF1KB9 SQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGS
::: :::: .: : :: ::. : ::. :
XP_011 --------------YGGDRSGGGYGGDRG----GGYGGDRGGYGGKMGGRNDYRNDQRNR
460 470 480 490
280 290 300 310
pF1KB9 VCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPTWPSK
XP_011 PY
500
>>NP_003478 (OMIM: 601574,612237) TATA-binding protein-a (589 aa)
initn: 1112 init1: 331 opt: 434 Z-score: 244.0 bits: 54.2 E(85289): 7.5e-07
Smith-Waterman score: 438; 39.1% identity (50.4% similar) in 258 aa overlap (4-258:375-575)
10 20 30
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGG
: ..: :. . ::: : : ::
NP_003 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS----RPSGGDFRGRGYGGER
350 360 370 380 390 400
40 50 60 70 80 90
pF1KB9 CGFFGGGGSGGGSSGSGCGYSGGGGYSGG-GCGGGSSGGGGGGGIGG--CGGGSGGSVKY
:. : :: :: .: : : .::::.: . ::: :: .::: :: ::: ::. .
NP_003 -GYRGRGGRGGDRGGYG-GDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD-RG
410 420 430 440 450
100 110 120 130 140 150
pF1KB9 SGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGG
.: ::. ::: : .. ::: : .: ::. ::: : : :. :: : ... ::
NP_003 GGYGGDRGGGYG--GDRGGGYGGDRGGYGGDRGGGYG----GDRGGYGGDRGGYGGDRGG
460 470 480 490 500 510
160 170 180 190 200 210
pF1KB9 FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVS
. ::. :: .: : :: ::. ::::: :: :::
NP_003 Y---------------GGDRGGYGGDRSRGGYGGD----RGGGSGYGGDRSGG-------
520 530 540
220 230 240 250 260 270
pF1KB9 SQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGS
::: :::: .: : :: ::. : ::. :
NP_003 --------------YGGDRSGGGYGGDRG----GGYGGDRGGYGGKMGGRNDYRNDQRNR
550 560 570 580
280 290 300 310
pF1KB9 VCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPTWPSK
NP_003 PY
>>NP_631961 (OMIM: 601574,612237) TATA-binding protein-a (592 aa)
initn: 1112 init1: 331 opt: 434 Z-score: 243.9 bits: 54.2 E(85289): 7.5e-07
Smith-Waterman score: 438; 39.1% identity (50.4% similar) in 258 aa overlap (4-258:378-578)
10 20 30
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGG
: ..: :. . ::: : : ::
NP_631 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDS----RPSGGDFRGRGYGGER
350 360 370 380 390 400
40 50 60 70 80 90
pF1KB9 CGFFGGGGSGGGSSGSGCGYSGGGGYSGG-GCGGGSSGGGGGGGIGG--CGGGSGGSVKY
:. : :: :: .: : : .::::.: . ::: :: .::: :: ::: ::. .
NP_631 -GYRGRGGRGGDRGGYG-GDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD-RG
410 420 430 440 450 460
100 110 120 130 140 150
pF1KB9 SGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGG
.: ::. ::: : .. ::: : .: ::. ::: : : :. :: : ... ::
NP_631 GGYGGDRGGGYG--GDRGGGYGGDRGGYGGDRGGGYG----GDRGGYGGDRGGYGGDRGG
470 480 490 500 510
160 170 180 190 200 210
pF1KB9 FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVS
. ::. :: .: : :: ::. ::::: :: :::
NP_631 Y---------------GGDRGGYGGDRSRGGYGGD----RGGGSGYGGDRSGG-------
520 530 540
220 230 240 250 260 270
pF1KB9 SQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGS
::: :::: .: : :: ::. : ::. :
NP_631 --------------YGGDRSGGGYGGDRG----GGYGGDRGGYGGKMGGRNDYRNDQRNR
550 560 570 580 590
280 290 300 310
pF1KB9 VCGGGSSGGGGGGSSVGGSGSGKGVPICHQTQQKQAPTWPSK
NP_631 PY
>>XP_005268883 (OMIM: 164017,615424,615426) PREDICTED: h (372 aa)
initn: 529 init1: 324 opt: 415 Z-score: 236.4 bits: 52.2 E(85289): 2e-06
Smith-Waterman score: 415; 42.9% identity (66.5% similar) in 182 aa overlap (30-207:195-369)
10 20 30 40 50
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGY
: .: : :::: ::: .:. ... ::..
XP_005 QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGG-RGGGFGGND-NFGRGGNF
170 180 190 200 210 220
60 70 80 90 100 110
pF1KB9 SGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGG
:: : ::: :::: :: : .: :.. :.::: . .::: ..::: : : .:: :
XP_005 SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYG
230 240 250 260 270 280
120 130 140 150 160 170
pF1KB9 GSSGGGSGCFSSGGGGSSGGGSGCFSSGGGG---FSGQAVQCQSYGGVSSGGSSGGGSGC
:: :. ...::::. ::::: .:::. :.. : ...: ...:. .: .::
XP_005 GS--GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP
290 300 310 320 330 340
180 190 200 210 220 230
pF1KB9 FSSGGGGGSVCGYSGGGSGCGGGSSGGS-GSGYVSSQQVTQTSCAPQPSYGGGSSGGGGS
. ::::. . . .: ::.::..: :::
XP_005 Y---GGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
350 360 370
240 250 260 270 280 290
pF1KB9 GGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGV
312 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:27:28 2016 done: Fri Nov 4 19:27:29 2016
Total Scan time: 5.910 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]