FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9821, 312 aa
  1>>>pF1KB9821 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4132+/-0.00146; mu= 4.2565+/- 0.089
 mean_var=373.2997+/-75.709, 0's: 0 Z-trim(111.3): 150  B-trim: 27 in 1/51
 Lambda= 0.066381
 statistics sampled from 12125 (12268) to 12125 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.377), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS30870.1 LOR gene_id:4014|Hs108|chr1            ( 312) 2298 233.9 1.3e-61


>>CCDS30870.1 LOR gene_id:4014|Hs108|chr1                 (312 aa)
 initn: 2298 init1: 2298 opt: 2298  Z-score: 1219.8  bits: 233.9 E(32554): 1.3e-61
Smith-Waterman score: 2298; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB9 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSYQKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICHQ
              250       260       270       280       290       300

              310  
pF1KB9 TQQKQAPTWPSK
       ::::::::::::
CCDS30 TQQKQAPTWPSK
              310  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:27:27 2016 done: Fri Nov  4 19:27:28 2016
 Total Scan time:  2.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]