FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9820, 311 aa
  1>>>pF1KB9820 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4829+/-0.000737; mu= 7.1897+/- 0.044
 mean_var=144.9100+/-29.424, 0's: 0 Z-trim(115.0): 55  B-trim: 355 in 1/52
 Lambda= 0.106543
 statistics sampled from 15543 (15599) to 15543 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.479), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS35308.1 FOXR2 gene_id:139628|Hs108|chrX        ( 311) 2244 355.7 2.7e-98
CCDS31688.1 FOXR1 gene_id:283150|Hs108|chr11       ( 292) 1108 181.0 9.4e-46


>>CCDS35308.1 FOXR2 gene_id:139628|Hs108|chrX             (311 aa)
 initn: 2244 init1: 2244 opt: 2244  Z-score: 1878.2  bits: 355.7 E(32554): 2.7e-98
Smith-Waterman score: 2244; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKCYQSQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKCYQSQKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 WQINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPDGWKSTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 WQINNQEKSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPDGWKSTI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 HYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRERIQECMS
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS35 HYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRVLAFAQRERIQECMS
              250       260       270       280       290       300

              310 
pF1KB9 QPELLTSLFDL
       :::::::::::
CCDS35 QPELLTSLFDL
              310 

>>CCDS31688.1 FOXR1 gene_id:283150|Hs108|chr11            (292 aa)
 initn: 1116 init1: 600 opt: 1108  Z-score: 934.9  bits: 181.0 E(32554): 9.4e-46
Smith-Waterman score: 1108; 57.2% identity (78.1% similar) in 292 aa overlap (26-311:1-292)

               10        20        30        40        50        60
pF1KB9 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
                                : :::::  ::..  :::: ::.:.. ..:::..:
CCDS31                          MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLP
                                        10        20        30     

               70        80        90       100       110       120
pF1KB9 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
        ...:.:: :::  ::::::::.:::. : :. :.     .::::.  :  :::::.: .
CCDS31 LEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDA
          40        50        60        70        80        90     

              130       140       150        160          170      
pF1KB9 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDDNS---LQSPEMKC-Y
       .:::   :::: .:::..:: .:.   ::: .:::::: ::. .:.:   : ::. .   
CCDS31 SCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPL
         100       110       120       130       140       150     

         180        190       200       210       220       230    
pF1KB9 QSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
       ::..: : ..:  . :.:::::  :::::::::.  :::.::.::.:::.::::: :::.
CCDS31 QSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPE
         160       170       180       190       200       210     

          240       250       260       270       280       290    
pF1KB9 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALAFAQRER
       :::.:...:::: ::::::: :..   ..::::::::::.:::::: ::.:::: .. : 
CCDS31 GWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLES
         220       230       240       250       260       270     

          300       310 
pF1KB9 IQECMSQPELLTSLFDL
       ::.:::::...  ::::
CCDS31 IQQCMSQPDVMPFLFDL
         280       290  




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:26:58 2016 done: Fri Nov  4 19:26:59 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]