Result of FASTA (omim) for
pF1KB9819
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9819, 310 aa
1>>>pF1KB9819 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1949+/-0.000287; mu= 10.3204+/- 0.018
mean_var=171.2327+/-35.233, 0's: 0 Z-trim(123.9): 4 B-trim: 1405 in 1/56
Lambda= 0.098012
statistics sampled from 44578 (44582) to 44578 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.523), width: 16
Scan time: 7.580
The best scores are: opt bits E(85289)
NP_777571 (OMIM: 609483) protein FAM84B [Homo sapi ( 310) 2148 314.8 1.5e-85
XP_016868596 (OMIM: 609483) PREDICTED: protein FAM ( 310) 2148 314.8 1.5e-85
XP_016868597 (OMIM: 609483) PREDICTED: protein FAM ( 292) 1669 247.0 3.4e-65
NP_660158 (OMIM: 611234) protein FAM84A [Homo sapi ( 292) 627 99.7 7.7e-21
>>NP_777571 (OMIM: 609483) protein FAM84B [Homo sapiens] (310 aa)
initn: 2148 init1: 2148 opt: 2148 Z-score: 1657.1 bits: 314.8 E(85289): 1.5e-85
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
250 260 270 280 290 300
310
pF1KB9 EEEDGEAVAH
::::::::::
NP_777 EEEDGEAVAH
310
>>XP_016868596 (OMIM: 609483) PREDICTED: protein FAM84B (310 aa)
initn: 2148 init1: 2148 opt: 2148 Z-score: 1657.1 bits: 314.8 E(85289): 1.5e-85
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
250 260 270 280 290 300
310
pF1KB9 EEEDGEAVAH
::::::::::
XP_016 EEEDGEAVAH
310
>>XP_016868597 (OMIM: 609483) PREDICTED: protein FAM84B (292 aa)
initn: 1669 init1: 1669 opt: 1669 Z-score: 1291.4 bits: 247.0 E(85289): 3.4e-65
Smith-Waterman score: 1950; 94.2% identity (94.2% similar) in 310 aa overlap (1-310:1-292)
10 20 30 40 50 60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQ--------
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ----------PQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
60 70 80 90 100
130 140 150 160 170 180
pF1KB9 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
230 240 250 260 270 280
310
pF1KB9 EEEDGEAVAH
::::::::::
XP_016 EEEDGEAVAH
290
>>NP_660158 (OMIM: 611234) protein FAM84A [Homo sapiens] (292 aa)
initn: 636 init1: 408 opt: 627 Z-score: 495.1 bits: 99.7 E(85289): 7.7e-21
Smith-Waterman score: 812; 46.1% identity (68.1% similar) in 295 aa overlap (1-270:1-285)
10 20 30 40 50 60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
::::....:::.:.:.::.::.:...:. :.::.:.::.:.::.. . : :
NP_660 MGNQLDRITHLNYSELPTGDPSGIEKDEL-RVGVAYFFSDDEEDLDER---------GQP
10 20 30 40 50
70 80 90 100
pF1KB9 D--GGDGPPPPQPQPYDPRLH-----------EVECSVFYRDECIYQK-SFAPGSAALST
: : .:: : : .: : :.. :.: .:::..: : .: .: ::.
NP_660 DKFGVKAPPGCTPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSV
60 70 80 90 100 110
110 120 130 140 150
pF1KB9 YTPENLLNKCKPGDLVEFV-------SQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDAS
:. : :.::::.:.. : ::::::::. :..:::. :. .. : .:.
NP_660 YAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 QGRRGRVVNDLYRYKPLSSSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGG
. :::::. :::.:: . ::.:: .:.: : .:. : ::::::::::.:::::: ::
NP_660 AANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGG
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 ELRIGKQP----YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHP
:. : :: : :...:. .. :: .:.:::::: :::: : :: ::::::
NP_660 EVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD
240 250 260 270 280 290
280 290 300 310
pF1KB9 AEPEEGDSNVARTTPPPGRPPAPSSEEEDGEAVAH
NP_660 KE
310 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:26:29 2016 done: Fri Nov 4 19:26:30 2016
Total Scan time: 7.580 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]