FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9819, 310 aa
  1>>>pF1KB9819 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0674+/-0.000725; mu= 10.9973+/- 0.044
 mean_var=163.4214+/-33.193, 0's: 0 Z-trim(116.2): 2  B-trim: 431 in 1/52
 Lambda= 0.100327
 statistics sampled from 16808 (16810) to 16808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.516), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS6358.1 FAM84B gene_id:157638|Hs108|chr8        ( 310) 2148 321.8 4.3e-88
CCDS1684.1 FAM84A gene_id:151354|Hs108|chr2        ( 292)  627 101.6 7.6e-22


>>CCDS6358.1 FAM84B gene_id:157638|Hs108|chr8             (310 aa)
 initn: 2148 init1: 2148 opt: 2148  Z-score: 1695.1  bits: 321.8 E(32554): 4.3e-88
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
              250       260       270       280       290       300

              310
pF1KB9 EEEDGEAVAH
       ::::::::::
CCDS63 EEEDGEAVAH
              310

>>CCDS1684.1 FAM84A gene_id:151354|Hs108|chr2             (292 aa)
 initn: 636 init1: 408 opt: 627  Z-score: 505.6  bits: 101.6 E(32554): 7.6e-22
Smith-Waterman score: 812; 46.1% identity (68.1% similar) in 295 aa overlap (1-270:1-285)

               10        20        30        40        50        60
pF1KB9 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
       ::::....:::.:.:.::.::.:...:.  :.::.:.::.:.::.. .         : :
CCDS16 MGNQLDRITHLNYSELPTGDPSGIEKDEL-RVGVAYFFSDDEEDLDER---------GQP
               10        20         30        40                 50

                 70                   80        90        100      
pF1KB9 D--GGDGPPPPQPQPYDPRLH-----------EVECSVFYRDECIYQK-SFAPGSAALST
       :  :  .::   : : .:  :           :.. :.:  .:::..: : .: .: ::.
CCDS16 DKFGVKAPPGCTPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSV
               60        70        80        90       100       110

        110       120              130       140       150         
pF1KB9 YTPENLLNKCKPGDLVEFV-------SQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDAS
       :.   :   :.::::.:..         :  ::::::::. :..:::. :. .. : .:.
CCDS16 YAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAG
              120       130       140       150       160       170

     160       170       180       190       200       210         
pF1KB9 QGRRGRVVNDLYRYKPLSSSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGG
        .  :::::. :::.:: .  ::.:: .:.: : .:. : ::::::::::.:::::: ::
CCDS16 AANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGG
              180       190       200       210       220       230

     220           230       240       250       260       270     
pF1KB9 ELRIGKQP----YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHP
       :.  : ::    : :...:. .. :: .:.:::::: :::: :  ::  ::::::     
CCDS16 EVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD
              240       250       260       270       280       290

         280       290       300       310
pF1KB9 AEPEEGDSNVARTTPPPGRPPAPSSEEEDGEAVAH
                                          
CCDS16 KE                                 
                                          




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:26:29 2016 done: Fri Nov  4 19:26:29 2016
 Total Scan time:  3.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]