FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9814, 294 aa
  1>>>pF1KB9814 294 - 294 aa - 294 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7677+/-0.000666; mu= 11.4415+/- 0.040
 mean_var=137.3811+/-27.029, 0's: 0 Z-trim(115.7): 1  B-trim: 0 in 0/54
 Lambda= 0.109424
 statistics sampled from 16311 (16312) to 16311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.501), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS34399.1 C6orf47 gene_id:57827|Hs108|chr6       ( 294) 2022 329.6 1.8e-90


>>CCDS34399.1 C6orf47 gene_id:57827|Hs108|chr6            (294 aa)
 initn: 2022 init1: 2022 opt: 2022  Z-score: 1737.9  bits: 329.6 E(32554): 1.8e-90
Smith-Waterman score: 2022; 99.7% identity (99.7% similar) in 294 aa overlap (1-294:1-294)

               10        20        30        40        50        60
pF1KB9 MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MFLRRLGGWLPRPWGRRKPMRPDPPYPEPRRVDSSSENSGSDWDSAPETMEDVGHPKTKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SGALRVSRAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHV
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGALRVSGAASEPSKEEPQVEQLGSKRMDSLKWDQPISSTQESGRLEAGGASPKLRWDHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DSGGTRRPGVSPEGGLSVPGPGAPLEKPGRREKLLGWLRGEPGAPSRYLGGPEECLQIST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NLTLHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAALHGLHAVLSLLT
              190       200       210       220       230       240

              250       260       270       280       290    
pF1KB9 AHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AHPLHFACLFGLLQALVLAVSLREPNGDEAATDWESEGLEREGEEQRGDPGKGL
              250       260       270       280       290    




294 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:11:34 2016 done: Fri Nov  4 19:11:35 2016
 Total Scan time:  2.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]