Result of FASTA (ccds) for
pF1KB9809
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9809, 241 aa
1>>>pF1KB9809 241 - 241 aa - 241 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3297+/-0.000767; mu= 7.2511+/- 0.047
mean_var=152.0541+/-30.610, 0's: 0 Z-trim(113.7): 44 B-trim: 0 in 0/52
Lambda= 0.104010
statistics sampled from 14258 (14302) to 14258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.439), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS14459.1 TGIF2LX gene_id:90316|Hs108|chrX ( 241) 1592 249.6 1.4e-66
CCDS14775.1 TGIF2LY gene_id:90655|Hs108|chrY ( 185) 983 158.1 3.6e-39
CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 ( 237) 416 73.1 1.8e-13
CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 ( 401) 383 68.4 8.2e-12
CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 ( 252) 379 67.6 8.8e-12
CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 ( 272) 379 67.6 9.3e-12
CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 ( 286) 379 67.7 9.7e-12
>>CCDS14459.1 TGIF2LX gene_id:90316|Hs108|chrX (241 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1309.0 bits: 249.6 E(32554): 1.4e-66
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
190 200 210 220 230 240
pF1KB9 P
:
CCDS14 P
>>CCDS14775.1 TGIF2LY gene_id:90655|Hs108|chrY (185 aa)
initn: 972 init1: 972 opt: 983 Z-score: 816.7 bits: 158.1 E(32554): 3.6e-39
Smith-Waterman score: 983; 84.9% identity (91.1% similar) in 179 aa overlap (1-179:1-178)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS14 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
:::::::::::::::::::::::::::: .. : : ... .:.. . .: :
CCDS14 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRAR-CQERSNQIRSRPL
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
CCDS14 ARSSPE
180
>>CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 (237 aa)
initn: 498 init1: 358 opt: 416 Z-score: 355.4 bits: 73.1 E(32554): 1.8e-13
Smith-Waterman score: 531; 46.8% identity (70.2% similar) in 205 aa overlap (50-240:18-221)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
CCDS13 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.::: :::::::::.:::::.. .:: :... :: . .. .
CCDS13 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 STEASVPAKSGPSGPDNVQSLPL--WPLPKGQMSREKQPDPES---APSQKLTGIAQPKK
.. :: : : :. : :: :: . :: .:: . : :.. .:. .: .
CCDS13 GSSPSVLAVSVPA-PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTL
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 KVKVSVTSPS-----SPELVSPEE-HADFSSFLLLVDAAVQRAAELELEKKQEPNP
... . ::. .: . ::. . ::::: :::..:.:::::.::.:.:.:.
CCDS13 LTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLH
170 180 190 200 210 220
CCDS13 TPIPLVSENPQ
230
>>CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 (401 aa)
initn: 473 init1: 357 opt: 383 Z-score: 325.5 bits: 68.4 E(32554): 8.2e-12
Smith-Waterman score: 386; 38.3% identity (64.9% similar) in 188 aa overlap (5-173:120-299)
10 20 30
pF1KB9 MEAAADGPAETQSPVE--KDSPAKTQSPAQDTSI
:.::: . .: : : . : ..: .
CCDS11 QPRALSPELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDS
90 100 110 120 130 140
40 50 60 70 80
pF1KB9 MS-----RNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLS
:. ..: .: :..:.:::: :::.:::::.:.::..:::::.:: .::
CCDS11 MDIPLDLSSSAGSG--------KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLS
150 160 170 180 190 200
90 100 110 120 130 140
pF1KB9 EKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQSTEA----
..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..:. .
CCDS11 QQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNF
210 220 230 240 250 260
150 160 170 180 190
pF1KB9 -----SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIAQPKKKVKV
.: .: .::. . . :: : :.. : .:
CCDS11 MPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSV
270 280 290 300 310 320
200 210 220 230 240
pF1KB9 SVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
CCDS11 GVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQL
330 340 350 360 370 380
>>CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 (252 aa)
initn: 473 init1: 357 opt: 379 Z-score: 325.0 bits: 67.6 E(32554): 8.8e-12
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:15-150)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
CCDS11 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
170 180 190 200 210 220
>>CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 (272 aa)
initn: 473 init1: 357 opt: 379 Z-score: 324.6 bits: 67.6 E(32554): 9.3e-12
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:35-170)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 KGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
70 80 90 100 110 120
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
CCDS11 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
190 200 210 220 230 240
>>CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 (286 aa)
initn: 473 init1: 357 opt: 379 Z-score: 324.3 bits: 67.7 E(32554): 9.7e-12
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:49-184)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 QGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
80 90 100 110 120 130
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
CCDS11 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
200 210 220 230 240 250
241 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:08:39 2016 done: Fri Nov 4 19:08:40 2016
Total Scan time: 2.590 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]