FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9802, 186 aa
  1>>>pF1KB9802 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4388+/-0.000713; mu= 14.0273+/- 0.043
 mean_var=84.5978+/-17.012, 0's: 0 Z-trim(111.0): 56  B-trim: 370 in 1/52
 Lambda= 0.139442
 statistics sampled from 11977 (12033) to 11977 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.37), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS30668.1 HMGB4 gene_id:127540|Hs108|chr1        ( 186) 1266 263.5 5.4e-71
CCDS3816.1 HMGB2 gene_id:3148|Hs108|chr4           ( 209)  540 117.5 5.5e-27
CCDS9335.1 HMGB1 gene_id:3146|Hs108|chr13          ( 215)  513 112.1 2.4e-25
CCDS35428.1 HMGB3 gene_id:3149|Hs108|chrX          ( 200)  483 106.0 1.5e-23
CCDS2477.1 SP100 gene_id:6672|Hs108|chr2           ( 879)  406 91.0 2.1e-18


>>CCDS30668.1 HMGB4 gene_id:127540|Hs108|chr1             (186 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1388.0  bits: 263.5 E(32554): 5.4e-71
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB9 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG
              130       140       150       160       170       180

             
pF1KB9 KRVRQS
       ::::::
CCDS30 KRVRQS
             

>>CCDS3816.1 HMGB2 gene_id:3148|Hs108|chr4                (209 aa)
 initn: 544 init1: 279 opt: 540  Z-score: 598.0  bits: 117.5 E(32554): 5.5e-27
Smith-Waterman score: 540; 45.5% identity (77.6% similar) in 165 aa overlap (1-163:1-165)

               10        20        30        40        50        60
pF1KB9 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
       :::    ::....:::. :. . :.. :...:.. :.: :::.::::.:...: .::.:.
CCDS38 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
               10        20        30        40        50        60

               70        80          90       100       110        
pF1KB9 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW
       : .:: :::::..:: :::  .  :: .:.::. :.::::.:.:::..:  ..: :.:. 
CCDS38 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB9 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRC
       :. ..::  :.:::  .  .:.::::..: :. :: ...  :: .               
CCDS38 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
              130       140       150       160       170       180

      180                           
pF1KB9 RGKRVRQS                     
                                    
CCDS38 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
              190       200         

>>CCDS9335.1 HMGB1 gene_id:3146|Hs108|chr13               (215 aa)
 initn: 508 init1: 279 opt: 513  Z-score: 568.5  bits: 112.1 E(32554): 2.4e-25
Smith-Waterman score: 513; 41.4% identity (76.3% similar) in 186 aa overlap (1-181:1-185)

               10        20        30        40        50        60
pF1KB9 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
       :::    ::....:::. :. . :.. :...:.. :.:.:::.::::.:...: .::.:.
CCDS93 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
               10        20        30        40        50        60

               70           80        90       100       110       
pF1KB9 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN
       : .:: :::::..:: .:.   :. ::. : ::. :.::::.:.:::...  ..: :.:.
CCDS93 EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG
               70        80        90        100       110         

       120       130       140       150       160         170     
pF1KB9 WSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQC--NARKKYRMSAR
        :. .:::  :.::....  .:.:::...: :. :: ...  :: .   .: ::  ..:.
CCDS93 LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAE
     120       130       140       150       160       170         

         180                               
pF1KB9 NRCRGKRVRQS                         
       .  . :                              
CCDS93 KSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
     180       190       200       210     

>>CCDS35428.1 HMGB3 gene_id:3149|Hs108|chrX               (200 aa)
 initn: 530 init1: 473 opt: 483  Z-score: 536.3  bits: 106.0 E(32554): 1.5e-23
Smith-Waterman score: 483; 40.5% identity (76.7% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB9 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
       :.:    :::...:.:. :. . :.. :...:.. :.: :::.::::.:...: .::.:.
CCDS35 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV
       . .:: ::.::..:: .:   .  ..:.::. :.::::.:.:::..   ..:  ::. :.
CCDS35 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRCRG
        .:::  :.::.. .: ::.::  ..: :. :: ...  :...                 
CCDS35 GDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKV
              130       140       150       160       170       180

                           
pF1KB9 KRVRQS              
                           
CCDS35 EEEDEEEEEEEEEEEEEEDE
              190       200

>>CCDS2477.1 SP100 gene_id:6672|Hs108|chr2                (879 aa)
 initn: 403 init1: 223 opt: 406  Z-score: 443.8  bits: 91.0 E(32554): 2.1e-18
Smith-Waterman score: 406; 34.8% identity (71.3% similar) in 178 aa overlap (8-181:682-859)

                                      10        20        30       
pF1KB9                        MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVG
                                     . :  . :. . :..  .. :...:.. : 
CCDS24 SKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCEEHKKKNPDASVK
             660       670       680       690       700       710 

        40        50        60        70        80          90     
pF1KB9 FKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRR
       :.:: .:::: :..:  .::.:.: .:: :::.:..:: .:.  .  ::.. .::. :.:
CCDS24 FSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKR
             720       730       740       750       760       770 

         100       110       120       130       140       150     
pF1KB9 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFE
       :: .:.:::...  ..: :.:. :. .:.:  . ::....  .:. ::...: :. :: .
CCDS24 PPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKK
             780       790       800       810       820       830 

         160         170       180                     
pF1KB9 ELELYRKQC--NARKKYRMSARNRCRGKRVRQS               
       ..  :: .   :. ::  ..:..  . :                    
CCDS24 DIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDDK
             840       850       860       870         




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:04:47 2016 done: Fri Nov  4 19:04:47 2016
 Total Scan time:  1.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]