Result of FASTA (omim) for
pF1KB9801
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9801, 185 aa
1>>>pF1KB9801 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6408+/-0.000289; mu= 13.1375+/- 0.018
mean_var=97.3048+/-19.364, 0's: 0 Z-trim(119.7): 112 B-trim: 0 in 0/52
Lambda= 0.130019
statistics sampled from 33862 (33991) to 33862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.399), width: 16
Scan time: 5.750
The best scores are: opt bits E(85289)
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY ( 185) 1248 243.3 1.6e-64
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX ( 241) 983 193.7 1.8e-49
NP_733796 (OMIM: 142946,602630) homeobox protein T ( 401) 383 81.4 2e-15
NP_775301 (OMIM: 142946,602630) homeobox protein T ( 252) 379 80.4 2.4e-15
NP_001265615 (OMIM: 142946,602630) homeobox protei ( 252) 379 80.4 2.4e-15
XP_011524037 (OMIM: 142946,602630) PREDICTED: home ( 252) 379 80.4 2.4e-15
NP_777480 (OMIM: 142946,602630) homeobox protein T ( 252) 379 80.4 2.4e-15
NP_775302 (OMIM: 142946,602630) homeobox protein T ( 252) 379 80.4 2.4e-15
NP_775303 (OMIM: 142946,602630) homeobox protein T ( 252) 379 80.4 2.4e-15
XP_016881448 (OMIM: 142946,602630) PREDICTED: home ( 252) 379 80.4 2.4e-15
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272) 379 80.5 2.6e-15
NP_775300 (OMIM: 142946,602630) homeobox protein T ( 272) 379 80.5 2.6e-15
NP_003235 (OMIM: 142946,602630) homeobox protein T ( 272) 379 80.5 2.6e-15
NP_001265613 (OMIM: 142946,602630) homeobox protei ( 272) 379 80.5 2.6e-15
NP_001265611 (OMIM: 142946,602630) homeobox protei ( 275) 379 80.5 2.6e-15
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286) 379 80.5 2.6e-15
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237) 369 78.5 8.5e-15
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237) 369 78.5 8.5e-15
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237) 369 78.5 8.5e-15
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237) 369 78.5 8.5e-15
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 270 60.1 4.3e-09
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 270 60.1 4.3e-09
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 270 60.1 4.3e-09
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443) 270 60.2 5.2e-09
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 270 60.2 5.5e-09
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 270 60.2 5.5e-09
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 270 60.2 5.5e-09
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 270 60.2 5.5e-09
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472) 270 60.2 5.5e-09
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 259 58.1 1.8e-08
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 257 57.6 1.9e-08
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 259 58.1 2.1e-08
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 259 58.1 2.1e-08
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 257 57.6 2.2e-08
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 257 57.6 2.2e-08
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 257 57.7 2.3e-08
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 257 57.7 2.3e-08
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 257 57.7 2.5e-08
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 257 57.7 2.6e-08
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 257 57.7 2.6e-08
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 257 57.7 2.6e-08
NP_733774 (OMIM: 601740) homeobox protein Meis2 is ( 394) 257 57.7 2.6e-08
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 257 57.7 2.6e-08
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 257 57.7 2.6e-08
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319) 255 57.3 2.9e-08
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 257 57.8 3e-08
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 257 57.8 3e-08
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 257 57.8 3e-08
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 257 57.8 3e-08
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 252 56.6 3.5e-08
>>NP_631960 (OMIM: 400025) homeobox protein TGIF2LY [Hom (185 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 1279.2 bits: 243.3 E(85289): 1.6e-64
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRARCQERSNQIRSRPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRARCQERSNQIRSRPLA
130 140 150 160 170 180
pF1KB9 RSSPE
:::::
NP_631 RSSPE
>>NP_620410 (OMIM: 300411) homeobox protein TGIF2LX [Hom (241 aa)
initn: 972 init1: 972 opt: 983 Z-score: 1009.0 bits: 193.7 E(85289): 1.8e-49
Smith-Waterman score: 983; 84.9% identity (91.1% similar) in 179 aa overlap (1-178:1-179)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
NP_620 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRAR-CQERSNQIRSRPL
:::::::::::::::::::::::::::: .. : : ... .:.. . .: :
NP_620 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
130 140 150 160 170 180
180
pF1KB9 ARSSPE
NP_620 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
190 200 210 220 230 240
>>NP_733796 (OMIM: 142946,602630) homeobox protein TGIF1 (401 aa)
initn: 369 init1: 351 opt: 383 Z-score: 397.8 bits: 81.4 E(85289): 2e-15
Smith-Waterman score: 383; 40.4% identity (68.1% similar) in 166 aa overlap (5-161:120-277)
10 20 30
pF1KB9 MEAAADGPAETQSPVE--KDSPAKTQSPAQDTSI
:.::: . .: : : . : ..: .
NP_733 QPRALSPELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDS
90 100 110 120 130 140
40 50 60 70 80
pF1KB9 MS-----RNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLS
:. ..: .: :..:.:::: :::.:::::.:.::..:::::.:: .::
NP_733 MDIPLDLSSSAGSG--------KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLS
150 160 170 180 190 200
90 100 110 120 130 140
pF1KB9 EKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTEASVPAKS-
..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:. . :.
NP_733 QQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNF
210 220 230 240 250 260
150 160 170 180
pF1KB9 GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
:... : ...: ::
NP_733 MPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSV
270 280 290 300 310 320
>>NP_775301 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_775 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
NP_775 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
NP_775 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>NP_001265615 (OMIM: 142946,602630) homeobox protein TG (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_001 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
NP_001 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
NP_001 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>XP_011524037 (OMIM: 142946,602630) PREDICTED: homeobox (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
XP_011 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
XP_011 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
XP_011 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>NP_777480 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_777 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
NP_777 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
NP_777 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>NP_775302 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_775 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
NP_775 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
NP_775 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>NP_775303 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_775 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
NP_775 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
NP_775 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>XP_016881448 (OMIM: 142946,602630) PREDICTED: homeobox (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 396.4 bits: 80.4 E(85289): 2.4e-15
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
XP_016 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
XP_016 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
XP_016 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
185 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:04:09 2016 done: Fri Nov 4 19:04:10 2016
Total Scan time: 5.750 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]