Result of FASTA (omim) for
pF1KB9799
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9799, 117 aa
1>>>pF1KB9799 117 - 117 aa - 117 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2562+/-0.000239; mu= 8.7877+/- 0.015
mean_var=112.4371+/-22.594, 0's: 0 Z-trim(125.1): 7 B-trim: 1418 in 1/58
Lambda= 0.120954
statistics sampled from 48241 (48248) to 48241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.566), width: 16
Scan time: 5.110
The best scores are: opt bits E(85289)
NP_689491 (OMIM: 300771) transcription elongation ( 100) 252 52.6 1.5e-07
XP_016885144 (OMIM: 300771) PREDICTED: transcripti ( 100) 252 52.6 1.5e-07
NP_004771 (OMIM: 300237) transcription elongation ( 159) 201 43.8 0.0001
NP_001006640 (OMIM: 300237) transcription elongati ( 159) 201 43.8 0.0001
NP_001006641 (OMIM: 300237) transcription elongati ( 159) 201 43.8 0.0001
>>NP_689491 (OMIM: 300771) transcription elongation fact (100 aa)
initn: 323 init1: 213 opt: 252 Z-score: 256.6 bits: 52.6 E(85289): 1.5e-07
Smith-Waterman score: 291; 45.6% identity (61.4% similar) in 114 aa overlap (1-113:1-100)
10 20 30 40 50
pF1KB9 MQKSCEENEGKPQ-NMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQ
::: :.::::::. ..:: :: :: . . :..::: : : .
NP_689 MQKPCKENEGKPKCSVPKREEKRPYGEFER--------------QQTEGNFRQRLLQSLE
10 20 30 40
60 70 80 90 100 110
pF1KB9 GFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
:::: ::. ::: : ::.:: :::: .:.:: .: ..::::.::::.
NP_689 EFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
50 60 70 80 90 100
>>XP_016885144 (OMIM: 300771) PREDICTED: transcription e (100 aa)
initn: 323 init1: 213 opt: 252 Z-score: 256.6 bits: 52.6 E(85289): 1.5e-07
Smith-Waterman score: 291; 45.6% identity (61.4% similar) in 114 aa overlap (1-113:1-100)
10 20 30 40 50
pF1KB9 MQKSCEENEGKPQ-NMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQ
::: :.::::::. ..:: :: :: . . :..::: : : .
XP_016 MQKPCKENEGKPKCSVPKREEKRPYGEFER--------------QQTEGNFRQRLLQSLE
10 20 30 40
60 70 80 90 100 110
pF1KB9 GFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
:::: ::. ::: : ::.:: :::: .:.:: .: ..::::.::::.
XP_016 EFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
50 60 70 80 90 100
>>NP_004771 (OMIM: 300237) transcription elongation fact (159 aa)
initn: 289 init1: 113 opt: 201 Z-score: 205.8 bits: 43.8 E(85289): 0.0001
Smith-Waterman score: 201; 38.4% identity (61.6% similar) in 125 aa overlap (2-113:42-159)
10 20
pF1KB9 MQKSCEE---NEGKPQNMPK---AEEDRPLE
:.: :: .: :. .:. .:: : :
NP_004 PQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQE
20 30 40 50 60 70
30 40 50 60 70
pF1KB9 DVPQEA--EGNPQPSEE---GVSQEA--EGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRG
. .. :: : : :. ::... ::. . . :. : :.:. ::::..
NP_004 GLSRKDLFEGRP-PMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQA
80 90 100 110 120 130
80 90 100 110
pF1KB9 VDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
.:::: :..:::::...:::: . ::::::.
NP_004 ADELE----EMKRVRNKLMIMHWKAK--RSRPYPI
140 150
>>NP_001006640 (OMIM: 300237) transcription elongation f (159 aa)
initn: 289 init1: 113 opt: 201 Z-score: 205.8 bits: 43.8 E(85289): 0.0001
Smith-Waterman score: 201; 38.4% identity (61.6% similar) in 125 aa overlap (2-113:42-159)
10 20
pF1KB9 MQKSCEE---NEGKPQNMPK---AEEDRPLE
:.: :: .: :. .:. .:: : :
NP_001 PQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQE
20 30 40 50 60 70
30 40 50 60 70
pF1KB9 DVPQEA--EGNPQPSEE---GVSQEA--EGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRG
. .. :: : : :. ::... ::. . . :. : :.:. ::::..
NP_001 GLSRKDLFEGRP-PMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQA
80 90 100 110 120 130
80 90 100 110
pF1KB9 VDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
.:::: :..:::::...:::: . ::::::.
NP_001 ADELE----EMKRVRNKLMIMHWKAK--RSRPYPI
140 150
>>NP_001006641 (OMIM: 300237) transcription elongation f (159 aa)
initn: 289 init1: 113 opt: 201 Z-score: 205.8 bits: 43.8 E(85289): 0.0001
Smith-Waterman score: 201; 38.4% identity (61.6% similar) in 125 aa overlap (2-113:42-159)
10 20
pF1KB9 MQKSCEE---NEGKPQNMPK---AEEDRPLE
:.: :: .: :. .:. .:: : :
NP_001 PQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPEMLLSEERPPQE
20 30 40 50 60 70
30 40 50 60 70
pF1KB9 DVPQEA--EGNPQPSEE---GVSQEA--EGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRG
. .. :: : : :. ::... ::. . . :. : :.:. ::::..
NP_001 GLSRKDLFEGRP-PMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGRNLSNEEMIQA
80 90 100 110 120 130
80 90 100 110
pF1KB9 VDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
.:::: :..:::::...:::: . ::::::.
NP_001 ADELE----EMKRVRNKLMIMHWKAK--RSRPYPI
140 150
117 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:03:03 2016 done: Fri Nov 4 19:03:04 2016
Total Scan time: 5.110 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]