FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9789, 202 aa
  1>>>pF1KB9789 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3156+/-0.000264; mu= 6.3684+/- 0.017
 mean_var=149.2790+/-29.787, 0's: 0 Z-trim(124.7): 3  B-trim: 0 in 0/55
 Lambda= 0.104972
 statistics sampled from 46793 (46797) to 46793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.549), width:  16
 Scan time:  7.640

The best scores are:                                      opt bits E(85289)
NP_006839 (OMIM: 605360) coiled-coil domain-contai ( 202) 1369 217.5 1.2e-56


>>NP_006839 (OMIM: 605360) coiled-coil domain-containing  (202 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1138.2  bits: 217.5 E(85289): 1.2e-56
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB9 MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AELEGRQEELLRENLALKELCLALGEEWGPRGGPSGAGGSGAGPAPELALPPCGPRDLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AELEGRQEELLRENLALKELCLALGEEWGPRGGPSGAGGSGAGPAPELALPPCGPRDLGD
              130       140       150       160       170       180

              190       200  
pF1KB9 GSSSTGSVGSPDQLPLACSPDD
       ::::::::::::::::::::::
NP_006 GSSSTGSVGSPDQLPLACSPDD
              190       200  




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:57:33 2016 done: Fri Nov  4 18:57:34 2016
 Total Scan time:  7.640 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]