FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9789, 202 aa
  1>>>pF1KB9789 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2491+/-0.00063; mu= 7.1978+/- 0.038
 mean_var=147.9725+/-29.494, 0's: 0 Z-trim(117.4): 5  B-trim: 5 in 1/50
 Lambda= 0.105435
 statistics sampled from 18113 (18118) to 18113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.557), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS8120.1 CCDC85B gene_id:11007|Hs108|chr11       ( 202) 1369 218.3 2.6e-57
CCDS46290.1 CCDC85A gene_id:114800|Hs108|chr2      ( 553)  551 94.2 1.6e-19
CCDS45161.1 CCDC85C gene_id:317762|Hs108|chr14     ( 419)  539 92.3 4.6e-19


>>CCDS8120.1 CCDC85B gene_id:11007|Hs108|chr11            (202 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1142.4  bits: 218.3 E(32554): 2.6e-57
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB9 MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQLQGHLGEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDLGGCWQKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AELEGRQEELLRENLALKELCLALGEEWGPRGGPSGAGGSGAGPAPELALPPCGPRDLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AELEGRQEELLRENLALKELCLALGEEWGPRGGPSGAGGSGAGPAPELALPPCGPRDLGD
              130       140       150       160       170       180

              190       200  
pF1KB9 GSSSTGSVGSPDQLPLACSPDD
       ::::::::::::::::::::::
CCDS81 GSSSTGSVGSPDQLPLACSPDD
              190       200  

>>CCDS46290.1 CCDC85A gene_id:114800|Hs108|chr2           (553 aa)
 initn: 572 init1: 493 opt: 551  Z-score: 464.0  bits: 94.2 E(32554): 1.6e-19
Smith-Waterman score: 551; 47.6% identity (76.4% similar) in 191 aa overlap (8-193:36-224)

                                      10        20        30       
pF1KB9                        MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLA
                                     : ...:::.   .::::.: ::: :: ...
CCDS46 GGAAAAAAAAESCSPAPAGSSAAPPAPVEDLSKVSDEELLQWSKEELIRSLRRAEAEKVS
          10        20        30        40        50        60     

        40        50        60        70        80        90       
pF1KB9 ALVQRGRLMQEVNRQLQGHLGEIRELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQ
       :..... :..::::.:: :::::: ::..:..:: .:.::::::::::..::.:.:..:.
CCDS46 AMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSRE
          70        80        90       100       110       120     

       100       110       120       130       140       150       
pF1KB9 WQLFGTQASRAVREDLGGCWQKLAELEGRQEELLRENLALKELCLALGEEWGPRGGPSGA
       :: .:  .. .......   ::: .:: .:::...::. :::::. : :: :  .: .:.
CCDS46 WQRLGRYTAGVMHKEVALYLQKLKDLEVKQEEVVKENMELKELCVLLDEEKG--AGCAGS
         130       140       150       160       170         180   

       160       170          180         190       200            
pF1KB9 GGSGAGPAPELALPPC-GP--RDLGDGSS--STGSVGSPDQLPLACSPDD          
         :  . :    :    .:  ::.:::::  ::::. :::.                   
CCDS46 RCSIDSQASLCQLTASTAPYVRDVGDGSSTSSTGSTDSPDHHKHHASSGSPEHLQKPRSE
           190       200       210       220       230       240   

CCDS46 GSPEHSKHRSASPEHPQKPRACGTPDRPKALKGPSPEHHKPLCKGSPEQQRHPHPGSSPE
           250       260       270       280       290       300   

>>CCDS45161.1 CCDC85C gene_id:317762|Hs108|chr14          (419 aa)
 initn: 627 init1: 504 opt: 539  Z-score: 455.8  bits: 92.3 E(32554): 4.6e-19
Smith-Waterman score: 592; 49.8% identity (72.2% similar) in 205 aa overlap (8-193:15-219)

                      10        20        30        40        50   
pF1KB9        MEAEAGGLEELTDEEMAALGKEELVRRLRREEAARLAALVQRGRLMQEVNRQL
                     : .. :::.   .::::.::::: :. ... ....: ::..:::.:
CCDS45 MAKPAATAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRL
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 QGHLGEIRELKQLNRRLQAENRELRDLCCFLDSERQRGRRAARQWQLFGTQASRAVREDL
       : :: ::: ::..:.::: .:.:::.::::::..::.::. ::.:: :: .:. :: ...
CCDS45 QQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEV
               70        80        90       100       110       120

           120       130       140          150       160       170
pF1KB9 GGCWQKLAELEGRQEELLRENLALKELCLALGEE---WGPRGGPSGAGGSGAGPAPELAL
       .   ::: :::.::: :::::: :::: : : ::    .  :. ::.::.:.: . . ..
CCDS45 ARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAATGAASGGGGGGGGAGSRSSI
              130       140       150       160       170       180

                            180         190       200              
pF1KB9 --------------PPCGPRDLGDGSS--STGSVGSPDQLPLACSPDD            
                     :  : ::.:::::  :.:: ::::.                     
CCDS45 DSQASLSGPLSGGAPGAGARDVGDGSSTSSAGSGGSPDHHHHVPPPLLPPGPHKAPDGKA
              190       200       210       220       230       240

CCDS45 GATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQQAGSGEFRTLR
              250       260       270       280       290       300




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:57:32 2016 done: Fri Nov  4 18:57:33 2016
 Total Scan time:  2.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]