FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9786, 191 aa
1>>>pF1KB9786 191 - 191 aa - 191 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6781+/-0.000359; mu= 18.0466+/- 0.023
mean_var=90.4650+/-17.805, 0's: 0 Z-trim(116.9): 376 B-trim: 777 in 1/54
Lambda= 0.134845
statistics sampled from 27975 (28412) to 27975 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.333), width: 16
Scan time: 5.890
The best scores are: opt bits E(85289)
NP_001656 (OMIM: 179505) rho-related GTP-binding p ( 191) 1305 263.2 1.9e-70
XP_005252973 (OMIM: 179505) PREDICTED: rho-related ( 191) 1305 263.2 1.9e-70
XP_016873208 (OMIM: 179505) PREDICTED: rho-related ( 191) 1305 263.2 1.9e-70
NP_008839 (OMIM: 602048) ras-related C3 botulinum ( 192) 936 191.4 7.7e-49
NP_005043 (OMIM: 602050) ras-related C3 botulinum ( 192) 922 188.7 5.1e-48
NP_002863 (OMIM: 602049,608203) ras-related C3 bot ( 192) 913 186.9 1.7e-47
NP_001782 (OMIM: 116952,616737) cell division cont ( 191) 837 172.1 4.8e-43
NP_001034891 (OMIM: 116952,616737) cell division c ( 191) 837 172.1 4.8e-43
NP_426359 (OMIM: 116952,616737) cell division cont ( 191) 814 167.6 1.1e-41
NP_001303236 (OMIM: 602050) ras-related C3 botulin ( 170) 759 156.9 1.7e-38
XP_006724349 (OMIM: 602049,608203) PREDICTED: ras- ( 161) 758 156.7 1.8e-38
NP_001300870 (OMIM: 165390) transforming protein R ( 193) 724 150.1 2e-36
NP_001655 (OMIM: 165390) transforming protein RhoA ( 193) 724 150.1 2e-36
NP_036381 (OMIM: 605857) rho-related GTP-binding p ( 205) 724 150.2 2.1e-36
NP_001036143 (OMIM: 165380) rho-related GTP-bindin ( 193) 713 148.0 8.8e-36
NP_786886 (OMIM: 165380) rho-related GTP-binding p ( 193) 713 148.0 8.8e-36
NP_001036144 (OMIM: 165380) rho-related GTP-bindin ( 193) 713 148.0 8.8e-36
NP_004031 (OMIM: 165370) rho-related GTP-binding p ( 196) 674 140.4 1.7e-33
NP_065714 (OMIM: 607653) rho-related GTP-binding p ( 214) 669 139.5 3.6e-33
NP_067028 (OMIM: 606366) rho-related GTP-binding p ( 258) 635 133.0 3.9e-31
NP_055393 (OMIM: 605781) rho-related GTP-binding p ( 210) 614 128.8 5.9e-30
XP_011531028 (OMIM: 605857) PREDICTED: rho-related ( 192) 611 128.1 8.3e-30
XP_016859205 (OMIM: 605857) PREDICTED: rho-related ( 172) 609 127.7 1e-29
NP_001300872 (OMIM: 165390) transforming protein R ( 187) 569 120.0 2.3e-27
NP_001241667 (OMIM: 602924) rho-related GTP-bindin ( 244) 565 119.3 4.8e-27
NP_005159 (OMIM: 602924) rho-related GTP-binding p ( 244) 565 119.3 4.8e-27
XP_006720277 (OMIM: 607653) PREDICTED: rho-related ( 176) 561 118.4 6.6e-27
NP_005431 (OMIM: 601555) rho-related GTP-binding p ( 227) 532 112.9 3.9e-25
XP_011523618 (OMIM: 601555) PREDICTED: rho-related ( 234) 532 112.9 4e-25
NP_061485 (OMIM: 602048) ras-related C3 botulinum ( 211) 512 108.9 5.5e-24
NP_001265294 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265296 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
XP_016863678 (OMIM: 602037) PREDICTED: rho-related ( 191) 479 102.5 4.4e-22
NP_001265289 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265292 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265290 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265288 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265293 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265291 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265297 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265295 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
NP_001265298 (OMIM: 602037) rho-related GTP-bindin ( 191) 479 102.5 4.4e-22
XP_011511994 (OMIM: 602037) PREDICTED: rho-related ( 191) 479 102.5 4.4e-22
NP_004301 (OMIM: 602037) rho-related GTP-binding p ( 191) 479 102.5 4.4e-22
XP_016863677 (OMIM: 602037) PREDICTED: rho-related ( 191) 479 102.5 4.4e-22
XP_011531030 (OMIM: 605857) PREDICTED: rho-related ( 157) 471 100.8 1.2e-21
NP_001300873 (OMIM: 165390) transforming protein R ( 173) 469 100.5 1.6e-21
NP_055285 (OMIM: 609038) rho-related GTP-binding p ( 232) 467 100.2 2.5e-21
XP_011523619 (OMIM: 601555) PREDICTED: rho-related ( 206) 450 96.9 2.3e-20
NP_001300874 (OMIM: 165390) transforming protein R ( 112) 386 84.1 8.9e-17
>>NP_001656 (OMIM: 179505) rho-related GTP-binding prote (191 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1385.8 bits: 263.2 E(85289): 1.9e-70
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:::::::::::
NP_001 PIKRGRSCILL
190
>>XP_005252973 (OMIM: 179505) PREDICTED: rho-related GTP (191 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1385.8 bits: 263.2 E(85289): 1.9e-70
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:::::::::::
XP_005 PIKRGRSCILL
190
>>XP_016873208 (OMIM: 179505) PREDICTED: rho-related GTP (191 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1385.8 bits: 263.2 E(85289): 1.9e-70
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:::::::::::
XP_016 PIKRGRSCILL
190
>>NP_008839 (OMIM: 602048) ras-related C3 botulinum toxi (192 aa)
initn: 918 init1: 918 opt: 936 Z-score: 997.8 bits: 191.4 E(85289): 7.7e-49
Smith-Waterman score: 936; 71.9% identity (86.5% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
NP_008 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: ::::..::.::::: :::
NP_008 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::...:::. .::: :: :.::.: ::.::::::: : :.: :: ::.:::: :
NP_008 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB9 PIK-RGRSCILL
:.: : :.:.::
NP_008 PVKKRKRKCLLL
190
>>NP_005043 (OMIM: 602050) ras-related C3 botulinum toxi (192 aa)
initn: 947 init1: 909 opt: 922 Z-score: 983.1 bits: 188.7 E(85289): 5.1e-48
Smith-Waterman score: 922; 69.8% identity (85.9% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
NP_005 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
NP_005 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::..::... :::: :: :.:..: .:.::::::: : :.: :: ::.:::: :
NP_005 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB9 PIKR-GRSCILL
:.:. :..: ..
NP_005 PVKKPGKKCTVF
190
>>NP_002863 (OMIM: 602049,608203) ras-related C3 botulin (192 aa)
initn: 941 init1: 900 opt: 913 Z-score: 973.6 bits: 186.9 E(85289): 1.7e-47
Smith-Waterman score: 913; 71.4% identity (84.9% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. ::.. :::.::::::
NP_002 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :::::: :: ::: ::::..::.::::: :::
NP_002 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::...:::. :::: :: ::::.: .:.::::::: : :.: :: ::.:::: :
NP_002 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
130 140 150 160 170 180
190
pF1KB9 PIKRG-RSCILL
: .. :.: ::
NP_002 PTRQQKRACSLL
190
>>NP_001782 (OMIM: 116952,616737) cell division control (191 aa)
initn: 837 init1: 837 opt: 837 Z-score: 893.8 bits: 172.1 E(85289): 4.8e-43
Smith-Waterman score: 837; 60.7% identity (85.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
NP_001 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
NP_001 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
NP_001 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:..: :.::
NP_001 EPKKSRRCVLL
190
>>NP_001034891 (OMIM: 116952,616737) cell division contr (191 aa)
initn: 837 init1: 837 opt: 837 Z-score: 893.8 bits: 172.1 E(85289): 4.8e-43
Smith-Waterman score: 837; 60.7% identity (85.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
NP_001 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
NP_001 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
NP_001 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
:..: :.::
NP_001 EPKKSRRCVLL
190
>>NP_426359 (OMIM: 116952,616737) cell division control (191 aa)
initn: 814 init1: 799 opt: 814 Z-score: 869.6 bits: 167.6 E(85289): 1.1e-41
Smith-Waterman score: 814; 59.2% identity (84.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
NP_426 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
NP_426 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
NP_426 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB9 PIKRGRSCILL
. :.: ..
NP_426 ETQPKRKCCIF
190
>>NP_001303236 (OMIM: 602050) ras-related C3 botulinum t (170 aa)
initn: 797 init1: 759 opt: 759 Z-score: 812.3 bits: 156.9 E(85289): 1.7e-38
Smith-Waterman score: 759; 73.8% identity (87.9% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB9 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
::.:::::::::::::::::: ::::::: ::::::::::::. :::. :::.::::::
NP_001 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
::.::::: ::::::.::.::::..:: :.:::: ::.::: :::: .:::::::: :::
NP_001 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
. ::..::... :::: :: :.:..:
NP_001 DDKDTIERLRDKKLAPITYPQGLAMAREIGGLCEIPGVLSPDPAGPEDSV
130 140 150 160 170
191 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:55:52 2016 done: Fri Nov 4 18:55:53 2016
Total Scan time: 5.890 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]