FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9784, 189 aa
  1>>>pF1KB9784 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5830+/-0.00077; mu= 12.4336+/- 0.047
 mean_var=197.2728+/-38.969, 0's: 0 Z-trim(117.0): 42  B-trim: 809 in 1/52
 Lambda= 0.091315
 statistics sampled from 17611 (17655) to 17611 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.542), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS5655.1 BHLHA15 gene_id:168620|Hs108|chr7       ( 189) 1268 177.7 3.7e-45


>>CCDS5655.1 BHLHA15 gene_id:168620|Hs108|chr7            (189 aa)
 initn: 1268 init1: 1268 opt: 1268  Z-score: 924.1  bits: 177.7 E(32554): 3.7e-45
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB9 MKTKNRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKTKNRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQPQGHLQRYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQPQGHLQRYST
              130       140       150       160       170       180

                
pF1KB9 QIHSFREGT
       :::::::::
CCDS56 QIHSFREGT
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:54:25 2016 done: Fri Nov  4 18:54:25 2016
 Total Scan time:  2.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]