Result of FASTA (ccds) for
pF1KB9783
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9783, 251 aa
1>>>pF1KB9783 251 - 251 aa - 251 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1288+/-0.000671; mu= 8.1472+/- 0.041
mean_var=134.3932+/-27.130, 0's: 0 Z-trim(115.9): 25 B-trim: 374 in 1/50
Lambda= 0.110633
statistics sampled from 16411 (16435) to 16411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.505), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS13986.1 CBX7 gene_id:23492|Hs108|chr22 ( 251) 1719 284.5 4.5e-77
CCDS32758.1 CBX4 gene_id:8535|Hs108|chr17 ( 560) 447 81.8 1.1e-15
CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22 ( 394) 420 77.3 1.7e-14
CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22 ( 412) 395 73.4 2.8e-13
CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17 ( 389) 380 71.0 1.4e-12
CCDS11764.1 CBX2 gene_id:84733|Hs108|chr17 ( 211) 345 65.2 4.1e-11
CCDS32757.1 CBX2 gene_id:84733|Hs108|chr17 ( 532) 348 65.9 6.1e-11
>>CCDS13986.1 CBX7 gene_id:23492|Hs108|chr22 (251 aa)
initn: 1719 init1: 1719 opt: 1719 Z-score: 1497.1 bits: 284.5 E(32554): 4.5e-77
Smith-Waterman score: 1719; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
190 200 210 220 230 240
250
pF1KB9 EGFFRDRSGKF
:::::::::::
CCDS13 EGFFRDRSGKF
250
>>CCDS32758.1 CBX4 gene_id:8535|Hs108|chr17 (560 aa)
initn: 505 init1: 426 opt: 447 Z-score: 395.0 bits: 81.8 E(32554): 1.1e-15
Smith-Waterman score: 447; 39.0% identity (63.8% similar) in 213 aa overlap (1-207:1-206)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
CCDS32 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
:.... :::::::::: :..: : :. : . . : :. .: ..
CCDS32 ERQEQLMGYRKRGPKPKPLVVQ--VPTFARRSNVLTGLQDSSTDNRAKLDLGA-QGKGQG
70 80 90 100 110
130 140 150 160 170
pF1KB9 GAPELVDKG--PLVPTLPFPLRKP----RKAHKYLRLSRKKFPPRGPNLESHSHRRELFL
:: .: : :: .... : .:. :: : :. . .. . .
CCDS32 HQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 QEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTF
.: :.: . ... ..::.. :.. :.:
CCDS32 KEAPSPTCPDLGAK----SHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGM
180 190 200 210 220 230
240 250
pF1KB9 REAQAAEGFFRDRSGKF
CCDS32 MPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPS
240 250 260 270 280 290
>>CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22 (394 aa)
initn: 517 init1: 391 opt: 420 Z-score: 373.8 bits: 77.3 E(32554): 1.7e-14
Smith-Waterman score: 423; 46.4% identity (64.3% similar) in 168 aa overlap (1-161:1-151)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
:::::.::.:::.::: :.:.:::..::::::::: :::::::::.::: ::. :.:.:
CCDS77 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMD---LRSS---HKAKGKEKLCFSLTC-PLGSGS
:.. . : .::::::: .::. : . :.:: :. : . : .. :: .
CCDS77 ERERELYGPKKRGPKPKTFLLKPSASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRPD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 PEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELF
:.: :.: : : : :: . .:. .: :: :
CCDS77 PQG----GSPGLR---P--PISPFS--------ETVRIINRKVKPREPKRNRIILNLKVI
130 140 150 160
180 190 200 210 220 230
pF1KB9 LQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVT
CCDS77 DKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPAP
170 180 190 200 210 220
>>CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22 (412 aa)
initn: 517 init1: 391 opt: 395 Z-score: 352.0 bits: 73.4 E(32554): 2.8e-13
Smith-Waterman score: 400; 43.8% identity (65.1% similar) in 169 aa overlap (1-165:1-156)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
:::::.::.:::.::: :.:.:::..::::::::: :::::::::.::: ::. :.:.:
CCDS13 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 EERDRASGYRKRGPKPKRLLLQ-RLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVK
:.. . : .::::::: .::. : . :: : . ::. ...::. .
CCDS13 ERERELYGPKKRGPKPKTFLLKARAQAEALRISD-------VHFSVKPSASASSPKLHSS
70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AGAPEL---VDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQE
:.. .: . . . :.: :. . :: :: .: :.
CCDS13 AAVHRLKKDIRRCHRMSRRPLPRPDPQGGSPGLR------PPISPFSETVRIINRKVKPR
120 130 140 150 160
180 190 200 210 220 230
pF1KB9 PPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFRE
CCDS13 EPKRNRIILNLKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHM
170 180 190 200 210 220
>>CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17 (389 aa)
initn: 457 init1: 380 opt: 380 Z-score: 339.4 bits: 71.0 E(32554): 1.4e-12
Smith-Waterman score: 380; 64.6% identity (87.8% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
:::::.::.:::.:.. :.:.:::..::::::::: :::::::::.::: ::. :.::.
CCDS11 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
:.. . : .::::::: .::.
CCDS11 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA
70 80 90 100 110 120
>>CCDS11764.1 CBX2 gene_id:84733|Hs108|chr17 (211 aa)
initn: 395 init1: 305 opt: 345 Z-score: 313.0 bits: 65.2 E(32554): 4.1e-11
Smith-Waterman score: 345; 49.1% identity (76.7% similar) in 116 aa overlap (2-117:3-114)
10 20 30 40 50
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
CCDS11 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVK
::.. .... :::: .: : ..: .:. :...: : : . . : : : ::
CCDS11 KEHEKEVQN-RKRGKRP-RGRPRKLTAMS-SCSRRSKLKVGGCAGYADPT-SQHPLGVGG
70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPA
CCDS11 RQREGLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLS
120 130 140 150 160 170
>>CCDS32757.1 CBX2 gene_id:84733|Hs108|chr17 (532 aa)
initn: 426 init1: 305 opt: 348 Z-score: 309.9 bits: 65.9 E(32554): 6.1e-11
Smith-Waterman score: 349; 36.8% identity (60.5% similar) in 223 aa overlap (2-205:3-212)
10 20 30 40 50
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE
:::..::::::.: : .::.::::.::::::.:: :...:::::.::::::..:...
CCDS32 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVK
::.. .... :::: .: : ..: .:. :...: :: : . .:.: .
CCDS32 KEHEKEVQN-RKRGKRP-RGRPRKLTAMS-SCSRRSKLKEPDAPSKSKSSSSSSSSTSSS
70 80 90 100 110
120 130 140 150 160
pF1KB9 AGAPELVD------KGPL-VPTLPFPLRKPR--------KAHKYLRLSRKKFPPRGPNLE
... : : .:: : : : .: . : . .:: .:: :
CCDS32 SSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPP-----E
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 SHSHRRELFLQEPPAPDVLQAAGE--WEPAAQ--PPEEEADADLAEGPPPWTPALPSSEV
... :: . : . ::..: . ::.. :: : ::
CCDS32 QKATRRPVSLAK-----VLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSA
180 190 200 210 220
230 240 250
pF1KB9 TVTDITANSITVTFREAQAAEGFFRDRSGKF
CCDS32 MATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLG
230 240 250 260 270 280
251 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:05:39 2016 done: Fri Nov 4 20:05:39 2016
Total Scan time: 2.850 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]