Result of FASTA (ccds) for
pF1KB9775
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9775, 678 aa
1>>>pF1KB9775 678 - 678 aa - 678 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9266+/-0.00142; mu= 0.8573+/- 0.084
mean_var=433.6690+/-89.941, 0's: 0 Z-trim(107.7): 140 B-trim: 0 in 0/54
Lambda= 0.061588
statistics sampled from 9644 (9732) to 9644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.299), width: 16
Scan time: 4.210
The best scores are: opt bits E(32554)
CCDS5720.1 CUX1 gene_id:1523|Hs108|chr7 ( 678) 4248 393.0 7.4e-109
CCDS47672.1 CUX1 gene_id:1523|Hs108|chr7 ( 676) 4221 390.6 3.9e-108
CCDS59071.1 CUX1 gene_id:1523|Hs108|chr7 ( 639) 3850 357.6 3.2e-98
CCDS56500.1 CUX1 gene_id:1523|Hs108|chr7 ( 662) 3786 351.9 1.7e-96
CCDS56499.1 CUX1 gene_id:1523|Hs108|chr7 ( 632) 3342 312.5 1.2e-84
CCDS56498.1 CUX1 gene_id:1523|Hs108|chr7 (1516) 2557 243.2 2.1e-63
CCDS5721.1 CUX1 gene_id:1523|Hs108|chr7 (1505) 2418 230.9 1.1e-59
CCDS41837.1 CUX2 gene_id:23316|Hs108|chr12 (1486) 1162 119.2 4.2e-26
>>CCDS5720.1 CUX1 gene_id:1523|Hs108|chr7 (678 aa)
initn: 4248 init1: 4248 opt: 4248 Z-score: 2067.8 bits: 393.0 E(32554): 7.4e-109
Smith-Waterman score: 4248; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
610 620 630 640 650 660
670
pF1KB9 LHKFHENDNGAAAGDLWQ
::::::::::::::::::
CCDS57 LHKFHENDNGAAAGDLWQ
670
>>CCDS47672.1 CUX1 gene_id:1523|Hs108|chr7 (676 aa)
initn: 2458 init1: 2458 opt: 4221 Z-score: 2054.9 bits: 390.6 E(32554): 3.9e-108
Smith-Waterman score: 4221; 99.7% identity (99.7% similar) in 678 aa overlap (1-678:1-676)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS47 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDV--AIEVLTRSSLE
250 260 270 280 290
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
600 610 620 630 640 650
670
pF1KB9 LHKFHENDNGAAAGDLWQ
::::::::::::::::::
CCDS47 LHKFHENDNGAAAGDLWQ
660 670
>>CCDS59071.1 CUX1 gene_id:1523|Hs108|chr7 (639 aa)
initn: 2647 init1: 2458 opt: 3850 Z-score: 1877.0 bits: 357.6 E(32554): 3.2e-98
Smith-Waterman score: 3909; 94.2% identity (94.2% similar) in 678 aa overlap (1-678:1-639)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::: ::
CCDS59 MAANVGSMFQYWKRFDLQQLQ-------------------------------------DL
10 20
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS59 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDV--AIEVLTRSSLE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
390 400 410 420 430 440
490 500 510 520 530 540
pF1KB9 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
450 460 470 480 490 500
550 560 570 580 590 600
pF1KB9 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
510 520 530 540 550 560
610 620 630 640 650 660
pF1KB9 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
570 580 590 600 610 620
670
pF1KB9 LHKFHENDNGAAAGDLWQ
::::::::::::::::::
CCDS59 LHKFHENDNGAAAGDLWQ
630
>>CCDS56500.1 CUX1 gene_id:1523|Hs108|chr7 (662 aa)
initn: 3776 init1: 3776 opt: 3786 Z-score: 1846.1 bits: 351.9 E(32554): 1.7e-96
Smith-Waterman score: 4103; 97.6% identity (97.6% similar) in 678 aa overlap (1-678:1-662)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPE--
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 --------------IDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
60 70 80 90 100
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB9 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
470 480 490 500 510 520
550 560 570 580 590 600
pF1KB9 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
530 540 550 560 570 580
610 620 630 640 650 660
pF1KB9 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
590 600 610 620 630 640
670
pF1KB9 LHKFHENDNGAAAGDLWQ
::::::::::::::::::
CCDS56 LHKFHENDNGAAAGDLWQ
650 660
>>CCDS56499.1 CUX1 gene_id:1523|Hs108|chr7 (632 aa)
initn: 3316 init1: 3316 opt: 3342 Z-score: 1633.1 bits: 312.5 E(32554): 1.2e-84
Smith-Waterman score: 3850; 93.2% identity (93.2% similar) in 678 aa overlap (1-678:1-632)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::
CCDS56 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVP--------------------
70 80 90 100
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::
CCDS56 --------------------------EVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
110 120 130
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB9 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSL
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB9 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEERLDPFSSFSKRERQRKYLSLSPW
500 510 520 530 540 550
610 620 630 640 650 660
pF1KB9 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADH
560 570 580 590 600 610
670
pF1KB9 LHKFHENDNGAAAGDLWQ
::::::::::::::::::
CCDS56 LHKFHENDNGAAAGDLWQ
620 630
>>CCDS56498.1 CUX1 gene_id:1523|Hs108|chr7 (1516 aa)
initn: 2587 init1: 2557 opt: 2557 Z-score: 1252.0 bits: 243.2 E(32554): 2.1e-63
Smith-Waterman score: 2557; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
CCDS56 ARRKGKDQPESRRPGSLPAPPPSQLPRNPGEQASNTNGTHQFSPAGLSQDFFSSSLASPS
430 440 450 460 470 480
>>CCDS5721.1 CUX1 gene_id:1523|Hs108|chr7 (1505 aa)
initn: 2448 init1: 2418 opt: 2418 Z-score: 1185.2 bits: 230.9 E(32554): 1.1e-59
Smith-Waterman score: 2418; 99.5% identity (100.0% similar) in 401 aa overlap (19-419:8-408)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
.:.:::::::::::::::::::::::::::::::::::::::
CCDS57 MLCVAGARLKRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
10 20 30 40
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 EMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQA
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGS
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB9 CAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATA
CCDS57 ARRKGKDQPESRRPGSLPAPPPSQLPRNPGEQASNTNGTHQFSPAGLSQDFFSSSLASPS
410 420 430 440 450 460
>>CCDS41837.1 CUX2 gene_id:23316|Hs108|chr12 (1486 aa)
initn: 1028 init1: 667 opt: 1162 Z-score: 582.2 bits: 119.2 E(32554): 4.2e-26
Smith-Waterman score: 1162; 49.5% identity (79.6% similar) in 402 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB9 MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDL
:::::::::::::::::..::.::...:. :. ::.:::.:.:.::: ::::::.::..
CCDS41 MAANVGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RKQVAPLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLH
:..:::.:::::.:. ::::::.:::::::.:::.::..:::::... ...:. ..:
CCDS41 REMVAPVLKSFQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRLQP-P
70 80 90 100 110
130 140 150 160 170
pF1KB9 DIETENQKLRE--TLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQK
... .: :. : . : :. :.:. . . : . .. :: :
CCDS41 SFDPSGQPRRDLHTSWKRNPELLSPKEQREGTSPAGPTLTEGSRLPGIPGK--ALLTETL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 LQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKAD
:: . :::.. :::.:.. ...: :::.:.. :..::. :..::..:. :::::...:::
CCDS41 LQRNEAEKQKGLQEVQITLAARLGEAEEKIKVLHSALKATQAELLELRRKYDEEAASKAD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 EIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSS
:. .:::.::.::::::.::::.:.:::::.:.: :..:: ..:. ... .: .
CCDS41 EVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGDKVNFTLCSGP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 -LEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLK
::. ::.:.::: .:..:::.::.:: .:.: ::.::..::.::.::. ....:::::.
CCDS41 RLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEKLQ
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB9 GQADYEEVKKELNILKSMEFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRISNSDL
.:.::::.: ::.:::.:..: : . : ::: . ::. :
CCDS41 AQSDYEEIKTELSILKAMKLASSTCSLPQGMAKPEDSLLIAKEAFFPTQKFLLEKPSLLA
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB9 SGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKE
CCDS41 SPEEDPSEDDSIKDSLGTEQSYPSPQQLPPPPGPEDPLSPSPGQPLLGPSLGPDGTRTFS
420 430 440 450 460 470
678 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:48:37 2016 done: Fri Nov 4 18:48:38 2016
Total Scan time: 4.210 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]