FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9727, 439 aa
  1>>>pF1KB9727 439 - 439 aa - 439 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5341+/-0.000363; mu= 7.4748+/- 0.023
 mean_var=127.6812+/-25.751, 0's: 0 Z-trim(117.5): 4  B-trim: 46 in 1/50
 Lambda= 0.113504
 statistics sampled from 29493 (29496) to 29493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.346), width:  16
 Scan time:  8.710

The best scores are:                                      opt bits E(85289)
XP_011511047 (OMIM: 189962) PREDICTED: general tra ( 439) 2885 483.6 4.3e-136
XP_011511046 (OMIM: 189962) PREDICTED: general tra ( 439) 2885 483.6 4.3e-136
NP_005504 (OMIM: 189962) general transcription fac ( 439) 2885 483.6 4.3e-136


>>XP_011511047 (OMIM: 189962) PREDICTED: general transcr  (439 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 2564.3  bits: 483.6 E(85289): 4.3e-136
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB9 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
              370       380       390       400       410       420

              430         
pF1KB9 EEKEAYIAMGQRMFEDLFE
       :::::::::::::::::::
XP_011 EEKEAYIAMGQRMFEDLFE
              430         

>>XP_011511046 (OMIM: 189962) PREDICTED: general transcr  (439 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 2564.3  bits: 483.6 E(85289): 4.3e-136
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB9 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
              370       380       390       400       410       420

              430         
pF1KB9 EEKEAYIAMGQRMFEDLFE
       :::::::::::::::::::
XP_011 EEKEAYIAMGQRMFEDLFE
              430         

>>NP_005504 (OMIM: 189962) general transcription factor   (439 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 2564.3  bits: 483.6 E(85289): 4.3e-136
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB9 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
              370       380       390       400       410       420

              430         
pF1KB9 EEKEAYIAMGQRMFEDLFE
       :::::::::::::::::::
NP_005 EEKEAYIAMGQRMFEDLFE
              430         




439 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:33:19 2016 done: Fri Nov  4 18:33:20 2016
 Total Scan time:  8.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]