FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9727, 439 aa
  1>>>pF1KB9727 439 - 439 aa - 439 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8266+/-0.000876; mu= 5.8135+/- 0.053
 mean_var=115.2811+/-23.197, 0's: 0 Z-trim(110.0): 8  B-trim: 7 in 2/48
 Lambda= 0.119452
 statistics sampled from 11315 (11317) to 11315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.348), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS3002.1 GTF2E1 gene_id:2960|Hs108|chr3          ( 439) 2885 507.9 8.1e-144


>>CCDS3002.1 GTF2E1 gene_id:2960|Hs108|chr3               (439 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 2695.5  bits: 507.9 E(32554): 8.1e-144
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB9 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP
              370       380       390       400       410       420

              430         
pF1KB9 EEKEAYIAMGQRMFEDLFE
       :::::::::::::::::::
CCDS30 EEKEAYIAMGQRMFEDLFE
              430         




439 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:33:18 2016 done: Fri Nov  4 18:33:18 2016
 Total Scan time:  3.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]