Result of FASTA (omim) for
pF1KB9702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9702, 327 aa
1>>>pF1KB9702 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8751+/-0.000274; mu= 7.4425+/- 0.017
mean_var=191.8922+/-38.454, 0's: 0 Z-trim(125.0): 258 B-trim: 63 in 1/61
Lambda= 0.092586
statistics sampled from 47551 (47828) to 47551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.561), width: 16
Scan time: 10.290
The best scores are: opt bits E(85289)
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 2214 307.0 3.4e-83
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 1003 145.3 1.9e-34
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 321 54.2 4.7e-07
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 304 51.8 2e-06
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 302 51.6 2.4e-06
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 300 51.3 2.7e-06
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 292 50.2 5.2e-06
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 292 50.2 5.9e-06
NP_001106175 (OMIM: 604294,614402) ventral anterio ( 334) 291 50.2 7.4e-06
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 285 49.3 1.2e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 49.7 1.3e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 49.7 1.3e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 287 49.7 1.3e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 49.7 1.3e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 287 49.7 1.3e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 49.7 1.3e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 287 49.7 1.3e-05
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 284 49.3 1.6e-05
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 283 49.3 2.1e-05
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 280 48.7 2.1e-05
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 277 48.2 2.4e-05
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 274 47.9 3.3e-05
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 275 48.0 3.3e-05
NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281) 273 47.7 3.4e-05
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 276 48.3 4e-05
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 276 48.3 4.1e-05
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 270 47.3 4.2e-05
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 268 47.0 4.8e-05
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 271 47.5 4.8e-05
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 269 47.2 5e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 267 46.9 6.6e-05
XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 265 46.6 6.9e-05
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 266 46.8 7.4e-05
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 266 46.9 8e-05
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 263 46.4 8.9e-05
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 266 47.0 9.8e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 256 45.3 0.00012
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 259 45.9 0.00014
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 256 45.3 0.00014
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 255 45.3 0.00017
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 256 45.5 0.00018
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 255 45.3 0.00019
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 253 45.0 0.00021
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 253 45.0 0.00021
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 254 45.3 0.00024
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 254 45.3 0.00026
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 254 45.3 0.00026
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 254 45.4 0.00029
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 254 45.4 0.0003
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 254 45.4 0.00031
>>NP_064448 (OMIM: 605211) barH-like 1 homeobox protein (327 aa)
initn: 2214 init1: 2214 opt: 2214 Z-score: 1614.5 bits: 307.0 E(85289): 3.4e-83
Smith-Waterman score: 2214; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB9 MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI
250 260 270 280 290 300
310 320
pF1KB9 HGLQGASEPPPPLPPLAGVLPRAAQPR
:::::::::::::::::::::::::::
NP_064 HGLQGASEPPPPLPPLAGVLPRAAQPR
310 320
>>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein (387 aa)
initn: 1075 init1: 723 opt: 1003 Z-score: 739.3 bits: 145.3 E(85289): 1.9e-34
Smith-Waterman score: 1025; 52.8% identity (67.8% similar) in 369 aa overlap (18-327:23-387)
10 20 30 40
pF1KB9 MEGSNGFGIDSILSHRAGSPALPKGD--PL----LGDCRSPLELSPRSESSSDCS
:::.. .:: :: .: :: :: :: .. .
NP_064 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
10 20 30 40 50 60
50 60 70 80
pF1KB9 SPASPGRDCLETGTPR------------------PGGASGPG-----LDSHLQP------
.:.:: .: :. : :..: : .. ::
NP_064 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
70 80 90 100 110 120
90 100 110 120 130
pF1KB9 -----GQL-SAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAA
:: :: . :: ::::::.:::.: ::::::::::.: ..:. . ..:.
NP_064 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS--VSSPHHTPKQESNAV
130 140 150 160 170
140 150 160 170 180
pF1KB9 -EDFRDKLDKSGSNASSD------SEYK---VKEEGDREISSSRDSPPVRLKKPRKARTA
:.:: ::.. :... : :. : .::::::::.:::.::::: :::::::::
NP_064 HESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTA
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB9 FTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELL
:.:::: ::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_064 FSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELL
240 250 260 270 280 290
250 260 270 280 290
pF1KB9 AEAGNYSALQRMFPSPYFYPQSLVSNLDP------GAALY--LYRGPSAPPPALQRPLVP
::::::::::::::::::: ::....: .::.: .:: : :: : :::::::
NP_064 AEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVP
300 310 320 330 340 350
300 310 320
pF1KB9 RILIHGLQGASEPPPPLPPLAGVLPRAAQPR
:.::::: ...: : ::.. .: . .::
NP_064 RVLIHGLGPGGQPA--LNPLSSPIPGTPHPR
360 370 380
>>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa)
initn: 257 init1: 257 opt: 321 Z-score: 247.6 bits: 54.2 E(85289): 4.7e-07
Smith-Waterman score: 336; 36.8% identity (57.4% similar) in 209 aa overlap (120-326:152-332)
90 100 110 120 130 140
pF1KB9 RTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNAS
: .: ::. . .::: : : :.
NP_061 GGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGA-VQREAAE-----LAARGPAAG
130 140 150 160 170
150 160 170 180 190 200
pF1KB9 SDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRM
.. .. : . .: . : . .:.::.:. :. ::: .:. ..::: .:
NP_061 TEEASELAEV-PAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERA
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB9 ELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVS
:::::.::.:::: :.::::.::::: :. :: : . . . ::. : .: .:
NP_061 GLAASLQLTETQVKIWFQNRRNKWKRQLAA--ELEAASLSPPGAQRLVRVPVLYHES---
240 250 260 270 280
270 280 290 300 310 320
pF1KB9 NLDPGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVL--PRAAQPR
:.:: ..:: .: ::.: .: ::::: ..:.: : :: :
NP_061 --PPAAA------AAGPPATLPFPLAP--------AAPAPPPPLLGFSGALAYPLAAFPA
290 300 310 320 330
NP_061 AASVPFLRAQMPGLV
340
>>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa)
initn: 323 init1: 255 opt: 304 Z-score: 236.3 bits: 51.8 E(85289): 2e-06
Smith-Waterman score: 304; 35.4% identity (55.8% similar) in 240 aa overlap (49-273:31-258)
20 30 40 50 60 70
pF1KB9 SPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE-TGTPRPGGASG---PGL
:.:: : : : : ::: : :.:
NP_066 MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGP-PGGRPGATYPSL
10 20 30 40 50
80 90 100 110 120
pF1KB9 DSHLQPGQLSAP---AQSRTVTSSFLIRDIL--ADCKPL-AACAPYSSSGQPAAPE-PG-
. . . :.:: : : .:. :. .. .:: .: : :. :: : :
NP_066 PASF--AGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ---GRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKART
: : :. : . . :.. . . : .. . .. .:: : ::: ::
NP_066 SSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNR--TPPKR-KKP---RT
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 AFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLEL
.:. :. .::. :.:::::. .: :: ::..::.:::::.:::::::.:::: :
NP_066 SFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTA--EER
180 190 200 210 220
250 260 270 280 290 300
pF1KB9 LAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILIHGL
:: . : :. .. : .:: ....:
NP_066 EAERQQASRLMLQLQHDAFQ-KSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVT
230 240 250 260 270 280
>>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot (284 aa)
initn: 313 init1: 252 opt: 302 Z-score: 235.0 bits: 51.6 E(85289): 2.4e-06
Smith-Waterman score: 308; 36.2% identity (54.8% similar) in 210 aa overlap (51-238:16-217)
30 40 50 60 70
pF1KB9 ALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGL--DSHL
: : : : . .: :::. : : ..:
NP_057 MEPGMLGPHNLPHHEPISFGIDQILSGPETPGGGLGLGRGGQGHG
10 20 30 40
80 90 100 110 120
pF1KB9 QPGQLSA---------PAQSRT-------VTSSFLIRDILADCKPLAACAPYSSSGQPAA
. : .:. :: : . : . .:: . .:: .: ..: ::.
NP_057 ENGAFSGGYHGASGYGPAGSLAPLPGSSGVGPGGVIR--VPAHRPLP--VPPPAGGAPAV
50 60 70 80 90 100
130 140 150 160 170
pF1KB9 PEPGGRLAAKAAEDFRDKLDKSGSNASSD--SEYKVKEEGDREISSSRD--SPPVRLKKP
: :.: .: . . :: ..: . : :.:. . .:: : :::
NP_057 PGPSGLGGAGGLAGLTFPWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPKR-KKP
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB9 RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTA
: :.:. :. .::: : :::::. .: :: .: .::.:::::.:::::::.::::
NP_057 R---TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTA
170 180 190 200 210
240 250 260 270 280 290
pF1KB9 VGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRI
NP_057 EEREAERHRAGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAEDNKVASV
220 230 240 250 260 270
>>NP_002440 (OMIM: 123101,168500,168550,604757) homeobox (267 aa)
initn: 318 init1: 237 opt: 300 Z-score: 233.9 bits: 51.3 E(85289): 2.7e-06
Smith-Waterman score: 333; 34.1% identity (54.3% similar) in 267 aa overlap (49-296:2-248)
20 30 40 50 60 70
pF1KB9 SPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHL
.:: : : : . :. ..:::
NP_002 MASP-SKGNDLFSPDEEGPAVVAGPGPG---
10 20
80 90 100 110 120 130
pF1KB9 QPGQLSAPAQSRTVTSS---FLIRDILADCKPLAACAPY----SSSGQPAAPEPGGRLAA
:: . :. : : : : .. ...: :: .: .:.: : . .:
NP_002 -PGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGA
30 40 50 60 70 80
140 150 160 170
pF1KB9 KAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISS-SRDSPPVRLKKP-----------R
. :.. : : .:: :: .:.: .. .: ::: : .: :
NP_002 REAHS-PGPLVKPFETASVKSEN--SEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHKTNR
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB9 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV
: :: :: :: :::.:....:::. .: :...:::::.:::: :.::::.: :: .
NP_002 KPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB9 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRIL
:: : :. . :.:: . : . : :. .:..: : : : ..::..:
NP_002 ELEKLKMAA-----KPMLPSSFSLPFPISSPLQ-AASIY---GASYP---FHRPVLPIPP
210 220 230 240 250
300 310 320
pF1KB9 IHGLQGASEPPPPLPPLAGVLPRAAQPR
NP_002 VGLYATPVGYGMYHLS
260
>>XP_011541345 (OMIM: 604823) PREDICTED: homeobox protei (233 aa)
initn: 341 init1: 292 opt: 292 Z-score: 228.9 bits: 50.2 E(85289): 5.2e-06
Smith-Waterman score: 292; 57.3% identity (80.0% similar) in 75 aa overlap (166-240:75-149)
140 150 160 170 180 190
pF1KB9 DFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLER
: ..: : ::::..:: ::. :: ::.
XP_011 PGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB9 SFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQR
.:..:::::. ::..:: ::.::. :::::::::: :::... :
XP_011 KFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKN
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB9 MFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPP
XP_011 SIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPI
170 180 190 200 210 220
>>NP_003649 (OMIM: 604823) homeobox protein BarH-like 2 (279 aa)
initn: 341 init1: 292 opt: 292 Z-score: 227.9 bits: 50.2 E(85289): 5.9e-06
Smith-Waterman score: 296; 35.3% identity (58.8% similar) in 187 aa overlap (80-240:12-195)
50 60 70 80 90 100
pF1KB9 SPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILAD--CK-
::::.: .: ..:.: .::. :
NP_003 MHCHAELRLSSPGQLKA---ARRRYKTFMIDEILSKETCDY
10 20 30
110 120 130 140 150
pF1KB9 ----------PLAACAP---YSSSGQPAA-PEPGGRLAAKAAEDFRDKLDKSGSNASSDS
: . : .: .:.:. : . .. . . . . :.. :
NP_003 FEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALS
40 50 60 70 80 90
160 170 180 190 200
pF1KB9 EYKVKEE------GDREISSSR---DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYL
..: : : . ..::. ..: : ::::..:: ::. :: ::..:..::::
NP_003 CHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB9 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY
:. ::..:: ::.::. :::::::::: :::... :
NP_003 STPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB9 PQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRA
NP_003 EAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPL
220 230 240 250 260 270
>>NP_001106175 (OMIM: 604294,614402) ventral anterior ho (334 aa)
initn: 274 init1: 221 opt: 291 Z-score: 226.2 bits: 50.2 E(85289): 7.4e-06
Smith-Waterman score: 300; 36.6% identity (58.7% similar) in 213 aa overlap (120-312:40-245)
90 100 110 120 130 140
pF1KB9 RTVTSSFLIRDILADCKPLAACAPYSSSGQPAA--PEPGGRLAAK-AAEDFRDKLDKSGS
::: :: : ..:. :::: .:: :
NP_001 VRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC----NKSKS
10 20 30 40 50 60
150 160 170 180 190 200
pF1KB9 NASSDSEYK----VKE-EGD-REISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQ
:...: .: :.. .:. ::: . . : .:...::.:: .:: .:: :.:
NP_001 NSAADPDYCRRILVRDAKGSIREIILPKG---LDLDRPKRTRTSFTAEQLYRLEMEFQRC
70 80 90 100 110 120
210 220 230 240 250
pF1KB9 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLEL---LAE-AGNYSALQRM
.:. ..: ::: .:::..::::.:.:::::: :.. . :: ..: :.. :.:. .
NP_001 QYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLL
130 140 150 160 170 180
260 270 280 290 300
pF1KB9 FPSPYFYPQSLVSNLDP---GAALYLYRGPSAPP----PALQRPLVPRILIHGLQGASEP
. . : .: . : : :: :::: : : . : ::. :
NP_001 EQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASP
190 200 210 220 230 240
310 320
pF1KB9 PPPLPPLAGVLPRAAQPR
::
NP_001 HPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGN
250 260 270 280 290 300
>>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa)
initn: 270 init1: 239 opt: 285 Z-score: 222.4 bits: 49.3 E(85289): 1.2e-05
Smith-Waterman score: 285; 31.2% identity (56.0% similar) in 234 aa overlap (74-296:67-287)
50 60 70 80 90 100
pF1KB9 SSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILA
. .: .:: :. ... : .. .
NP_002 AATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPG-----AKESALAPSEGVQAAGG
40 50 60 70 80 90
110 120 130 140 150
pF1KB9 DCKPLAACAPYSSSGQPAAP---EPGGRLAAKAAEDF-RDKLDKSGSNASSDSEYKVKEE
. .::.. : .: : : :: .: :.... . . .: : :. : . . ..
NP_002 SAQPLGV--PPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSP
100 110 120 130 140
160 170 180 190 200 210
pF1KB9 GDREISSSRDSPPV----RLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASL
. : :::. . : :: :: :: :: :::.:....:::. .: :...::
NP_002 RFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB9 NLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF---YPQSLVSNLD
.::.:::: :.::::.: :: . :: : :. . :.: : .: . . .
NP_002 SLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA-----KPMLPPAAFGLSFPLGGPAAVA
210 220 230 240 250 260
280 290 300 310 320
pF1KB9 PGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQPR
.:. :: : :.: :..:
NP_002 AAAGASLY-GASGPFQRAALPVAPVGLYTAHVGYSMYHLT
270 280 290 300
327 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:25:28 2016 done: Fri Nov 4 18:25:30 2016
Total Scan time: 10.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]