FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9694, 252 aa
  1>>>pF1KB9694 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0639+/-0.000833; mu= 4.2258+/- 0.051
 mean_var=206.2131+/-42.011, 0's: 0 Z-trim(114.5): 170  B-trim: 0 in 0/53
 Lambda= 0.089313
 statistics sampled from 14923 (15098) to 14923 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.464), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS7601.1 EMX2 gene_id:2018|Hs108|chr10           ( 252) 1725 233.9 8.2e-62
CCDS53583.1 EMX2 gene_id:2018|Hs108|chr10          ( 169)  967 136.0 1.5e-32
CCDS1921.2 EMX1 gene_id:2016|Hs108|chr2            ( 290)  897 127.2 1.2e-29


>>CCDS7601.1 EMX2 gene_id:2018|Hs108|chr10                (252 aa)
 initn: 1725 init1: 1725 opt: 1725  Z-score: 1223.2  bits: 233.9 E(32554): 8.2e-62
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB9 MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEEEGSDSQQKKKGTHHINRWRIATKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEEEGSDSQQKKKGTHHINRWRIATKQ
              190       200       210       220       230       240

              250  
pF1KB9 ASPEEIDVTSDD
       ::::::::::::
CCDS76 ASPEEIDVTSDD
              250  

>>CCDS53583.1 EMX2 gene_id:2018|Hs108|chr10               (169 aa)
 initn: 1060 init1: 967 opt: 967  Z-score: 697.6  bits: 136.0 E(32554): 1.5e-32
Smith-Waterman score: 967; 96.5% identity (97.9% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB9 MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVV
       ::::::::::::::::..   :                                      
CCDS53 PWLIHRYRYLGHRFQGKSMVSEPKNKVQKAEAGGRRLRFATKEKRDAPY           
              130       140       150       160                    

>>CCDS1921.2 EMX1 gene_id:2016|Hs108|chr2                 (290 aa)
 initn: 940 init1: 664 opt: 897  Z-score: 645.9  bits: 127.2 E(32554): 1.2e-29
Smith-Waterman score: 1043; 62.9% identity (80.9% similar) in 267 aa overlap (1-252:34-290)

                                             10        20          
pF1KB9                               MFQPAPKRCFTIESLVAKDSP---------
                                     ::::: :: ::::::::::.          
CCDS19 AGCTPRKAAAPGRGALPRARLPRTAPAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGG
            10        20        30        40        50        60   

                   30        40         50        60        70     
pF1KB9 -----LPASRSEDPIRPAALSYANSSPINP-FLNGFHSAAAAAAGRGVYSNPDLVFAEAV
            : :. ::.:.::.::.: . :  .  :..:: .::::.:::..:..:.::: ::.
CCDS19 AGSHLLAAAASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAM
            70        80        90       100       110       120   

          80        90       100       110       120       130     
pF1KB9 SHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQ
       .::   :. :::.   : :.: ::   . :: .:..:.:::  ::::.. : :..:::::
CCDS19 NHP---ALTVHPA---HQLGASPL---QPPHSFFGAQHRDPLHFYPWVL-RNRFFGHRFQ
              130          140          150       160        170   

         140       150       160       170       180       190     
pF1KB9 GNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTE
       ..:.  ...:::. .::::::::::::::::::::.::::::::::::::::: ::::.:
CCDS19 ASDVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSE
           180       190       200       210       220       230   

         200       210       220       230       240       250  
pF1KB9 TQVKVWFQNRRTKFKRQKLEEEGSDSQQKKKGTHHINRWRIATKQASPEEIDVTSDD
       :::::::::::::.::::::::: .:.:::::.:::::::::::::. :.:::::.:
CCDS19 TQVKVWFQNRRTKYKRQKLEEEGPESEQKKKGSHHINRWRIATKQANGEDIDVTSND
           240       250       260       270       280       290




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:22:39 2016 done: Fri Nov  4 18:22:40 2016
 Total Scan time:  2.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]