Result of FASTA (omim) for
pF1KB9691
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9691, 230 aa
1>>>pF1KB9691 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2739+/-0.000319; mu= 11.6269+/- 0.020
mean_var=136.0700+/-27.689, 0's: 0 Z-trim(120.1): 240 B-trim: 33 in 1/55
Lambda= 0.109949
statistics sampled from 34707 (35004) to 34707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.41), width: 16
Scan time: 5.620
The best scores are: opt bits E(85289)
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 1557 257.5 1.4e-68
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 806 138.4 9.4e-33
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 443 80.6 1.6e-15
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 443 80.8 2.1e-15
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 439 80.2 3.4e-15
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 436 79.7 4.5e-15
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 436 79.7 4.5e-15
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 436 79.7 4.5e-15
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 435 79.6 5.3e-15
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 436 79.8 5.3e-15
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 434 79.5 6.3e-15
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 431 79.0 8.8e-15
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 428 78.5 1.1e-14
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 428 78.5 1.1e-14
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 429 78.7 1.2e-14
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 425 78.0 1.5e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 410 75.2 4.7e-14
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 411 75.9 8.4e-14
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 400 74.1 2.6e-13
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 400 74.1 2.6e-13
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 391 72.6 6.3e-13
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 377 70.4 3.2e-12
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 378 70.7 3.4e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 376 70.2 3.6e-12
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 337 64.2 3.3e-10
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 319 61.4 2.7e-09
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 319 61.4 2.7e-09
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 305 59.0 9.8e-09
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 305 59.1 1.1e-08
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 305 59.1 1.1e-08
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 305 59.2 1.3e-08
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 305 59.2 1.3e-08
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 59.2 1.3e-08
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 59.2 1.3e-08
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 59.2 1.3e-08
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 59.2 1.3e-08
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 59.2 1.3e-08
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 305 59.3 1.4e-08
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 59.3 1.5e-08
>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo (230 aa)
initn: 1557 init1: 1557 opt: 1557 Z-score: 1352.5 bits: 257.5 E(85289): 1.4e-68
Smith-Waterman score: 1557; 99.6% identity (100.0% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_008 MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
190 200 210 220 230
>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo (217 aa)
initn: 787 init1: 586 opt: 806 Z-score: 709.0 bits: 138.4 E(85289): 9.4e-33
Smith-Waterman score: 813; 58.4% identity (76.4% similar) in 233 aa overlap (1-224:1-217)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNA---EPTSCSFAPNSQRSGYGAGAGA-FASTVPGLYN
::: ::.:.::::: :..:.: .. : :::.:: : :: :::::.:: ::... :::
NP_004 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 VNSPLY-QSP---FASGYGLGADAYGNLPCASYDQNIPGLC-SDLAKGACDKTDEGALHG
.. . :: .:.:::: ... :. :: ..::. :.: .: ::.: : .. .
NP_004 GGGGMAGQSAAGVYAAGYGLEPSSF-NMHCAPFEQNLSGVCPGDSAKAAGAKEQRDS-DL
70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE
:::.:::::::::::: ::::::::::::::::::::::.::::::::::::::.:::::
NP_004 AAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 RQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
:::::::::::::::::.: :: .:.. :.:. :...::
NP_004 RQIKIWFQNRRMKWKKENKTAGP--------------GTTGQDRAEAEEEEEE
180 190 200 210
>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo (153 aa)
initn: 480 init1: 398 opt: 443 Z-score: 399.7 bits: 80.6 E(85289): 1.6e-15
Smith-Waterman score: 443; 57.3% identity (78.2% similar) in 124 aa overlap (114-229:35-153)
90 100 110 120 130
pF1KB9 SYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQ
.:...:::::. . : ::.::::
NP_710 CRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQ
10 20 30 40 50 60
140 150 160 170 180 190
pF1KB9 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPT
:.::::::::::::::::::::::::::.::::::::::::::::::::::: .
NP_710 IYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN-----
70 80 90 100 110
200 210 220 230
pF1KB9 AAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
... :. .:.: . . : ..... :::...:
NP_710 LTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
120 130 140 150
>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo (235 aa)
initn: 504 init1: 398 opt: 443 Z-score: 397.4 bits: 80.8 E(85289): 2.1e-15
Smith-Waterman score: 477; 39.9% identity (65.0% similar) in 243 aa overlap (3-229:2-235)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTAG-TSLFQNAEPTSCSFAPNSQRSGYGAG-AGAFASTVPGLYNVN
.::..: .: . :: ... :. .: .. : . : :::. : ..: .:
NP_004 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP-FY---
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SPLYQSPFASGYG---LGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEGALHGAA
:: . :.:. : :.... . .. :: : .. . . ....:
NP_004 SPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQD
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 E-ANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA
. :...:::::. . : ::.:::: :.::::::::::::::::::::::::::
NP_004 QKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 HALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEE
.::::::::::::::::::::::: . ... :. .:.: . . : ..... ::
NP_004 NALCLTERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEE
180 190 200 210 220 230
230
pF1KB9 EEDEEE
:...:
NP_004 EKQKE
>>XP_005257343 (OMIM: 142963) PREDICTED: homeobox protei (242 aa)
initn: 492 init1: 399 opt: 439 Z-score: 393.8 bits: 80.2 E(85289): 3.4e-15
Smith-Waterman score: 506; 43.3% identity (63.7% similar) in 245 aa overlap (3-224:2-242)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPTSCSFAPN-SQRSG--YG-AGAGAFA--STVPGL
:::.::.::::: .: :: : .:.:: . . : :: ...:.: : . .
XP_005 MSSYFVNSLFSKYKTGESLRPNYY--DCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEF
10 20 30 40 50
60 70 80 90 100
pF1KB9 YNVNS-----PLYQSPFASG-YGLGADAYGNLPCASYDQNIPGLCS-DLAKGA-CDKTDE
:. : : :.: : . .: .. :: : :.. : . ::.. : : .
XP_005 YHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQR--QSLFGAQDPDLVQYADCKLAAA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB9 GALHGAAEAN------FRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRR
..: ::.. ...:::: .. :.::::::.::::::::::: :: ::::.::
XP_005 SGLGEEAEGSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRR
120 130 140 150 160 170
170 180 190 200 210
pF1KB9 IEIAHALCLTERQIKIWFQNRRMKWKKEH-KDEGPTAAAAPEGAVPSAAATA--AADKAD
::..::: :::::.::::::::::::::. ::. :.. : . : :::..:
XP_005 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGD
180 190 200 210 220 230
220 230
pF1KB9 EEDDDEEEEDEEE
. :..
XP_005 AQKGDKK
240
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 491 init1: 410 opt: 436 Z-score: 391.6 bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
:::.::. : : : : . : : . : . :: : : .::..
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
10 20 30 40 50
60 70 80 90 100
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
: : ..::: .: :: : :: : .. : . . :. :
XP_005 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
60 70 80 90 100
110 120 130 140 150
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
::. : . . . .::::. : ::. .:::::::::::::::::::.:
XP_005 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
:::::::::::::::::::::::::::::::::::: : . . .: :
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
220 230
pF1KB9 ADKADEEDDDEEEEDEEE
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 491 init1: 410 opt: 436 Z-score: 391.6 bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
:::.::. : : : : . : : . : . :: : : .::..
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
10 20 30 40 50
60 70 80 90 100
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
: : ..::: .: :: : :: : .. : . . :. :
NP_061 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
60 70 80 90 100
110 120 130 140 150
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
::. : . . . .::::. : ::. .:::::::::::::::::::.:
NP_061 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
:::::::::::::::::::::::::::::::::::: : . . .: :
NP_061 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
220 230
pF1KB9 ADKADEEDDDEEEEDEEE
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 491 init1: 410 opt: 436 Z-score: 391.6 bits: 79.7 E(85289): 4.5e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:2-217)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPG
:::.::. : : : : . : : . : . :: : : .::..
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS--
10 20 30 40 50
60 70 80 90 100
pF1KB9 LYNVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC-
: : ..::: .: :: : :: : .. : . . :. :
XP_005 --------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
60 70 80 90 100
110 120 130 140 150
pF1KB9 -DKTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFN
::. : . . . .::::. : ::. .:::::::::::::::::::.:
XP_005 QDKSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB9 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAA
:::::::::::::::::::::::::::::::::::: : . . .: :
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
220 230
pF1KB9 ADKADEEDDDEEEEDEEE
>>NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [Homo (242 aa)
initn: 537 init1: 389 opt: 435 Z-score: 390.4 bits: 79.6 E(85289): 5.3e-15
Smith-Waterman score: 508; 42.5% identity (61.0% similar) in 259 aa overlap (3-230:2-236)
10 20 30 40 50
pF1KB9 MSSSYYVNALFSKYTAGTSLFQNAEPT--SCSFAPNSQRSG---YGAGAGAFASTVPGLY
:::.:: ::::: :: :: ::. .: : . :: :: :..: ::.
NP_073 MSSYFVNPLFSKYKAGESL----EPAYYDCRFPQSVGRSHALVYGPGGSA-----PGFQ
10 20 30 40 50
60 70 80 90
pF1KB9 NVNSPLYQSPFASGY-GLGADAYGNLPCA-----------SYD----QNIPGLCS-----
.. : :. : : :.. ..: . ::. .:. :.. : .
NP_073 HA-SHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVV
60 70 80 90 100
100 110 120 130 140 150
pF1KB9 ---DLAKGACDKTDEGALHGAAEANFRI-YPWMRSSGPDRKRGRQTYTRYQTLELEKEFH
: ..: ...:: : ... . .:::: .: :. :::::.:::::::::::
NP_073 QYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFL
110 120 130 140 150 160
160 170 180 190 200
pF1KB9 FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH-KDEGPTAAAAPEGAVPSAAA
:: ::::.::::..::: :::::.::::::::::::::. ::. : .: :
NP_073 FNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP--GARDE--------
170 180 190 200 210
210 220 230
pF1KB9 TAAADKADEEDDDEEEEDEEE
.:..:: ..:::..:::
NP_073 ----EKVEEEGNEEEEKEEEEKEENKD
220 230 240
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 495 init1: 410 opt: 436 Z-score: 390.3 bits: 79.8 E(85289): 5.3e-15
Smith-Waterman score: 481; 44.9% identity (57.3% similar) in 227 aa overlap (3-201:66-281)
10 20 30
pF1KB9 MSSSYYVNALFSKYTA-GTSLFQNAEPTSCSF
:::.::. : : : : . : :
XP_011 FNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSSG
40 50 60 70 80 90
40 50 60 70 80
pF1KB9 APNSQR---SGYGAGAG---AFASTVPGLYNVNSPLYQSPFASGYGLGADA-YGNLP---
. : . :: : : .::.. : : ..::: .: :: :
XP_011 YADPLRHYPAPYGPGPGQDKGFATSS----------YYPPAGGGYGRAAPCDYGPAPAFY
100 110 120 130 140
90 100 110 120
pF1KB9 ------CA-SYDQNIPGLCSDLAKGAC--DKTDEGALHGAAEANFRIYPWMR--------
:: : .. : . . :. : ::. : . . . .::::.
XP_011 REKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETE-EQKCSTPVYPWMQRMNSCNSS
150 160 170 180 190 200
130 140 150 160 170 180
pF1KB9 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK
: ::. .:::::::::::::::::::.:::::::::::::::::::::::::::::::::
XP_011 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK
210 220 230 240 250 260
190 200 210 220 230
pF1KB9 WKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
:::: : . . .: :
XP_011 WKKESKLLSASQLSAEEEEEKQAE
270 280
230 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:21:38 2016 done: Fri Nov 4 18:21:39 2016
Total Scan time: 5.620 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]