FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9689, 230 aa
  1>>>pF1KB9689 230 - 230 aa - 230 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1873+/-0.000368; mu= -9.4552+/- 0.023
 mean_var=460.3218+/-93.750, 0's: 0 Z-trim(126.3): 15  B-trim: 0 in 0/62
 Lambda= 0.059778
 statistics sampled from 51870 (51898) to 51870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.608), width:  16
 Scan time:  8.360

The best scores are:                                      opt bits E(85289)
NP_001159439 (OMIM: 608059,613686) transcription f ( 230) 1649 155.0 9.7e-38
XP_016880721 (OMIM: 608059,613686) PREDICTED: tran ( 265) 1649 155.1 1.1e-37
NP_115969 (OMIM: 608059,613686) transcription fact ( 225) 1599 150.7 1.9e-36
XP_011522343 (OMIM: 608059,613686) PREDICTED: tran ( 259) 1554 146.9 3.1e-35


>>NP_001159439 (OMIM: 608059,613686) transcription facto  (230 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 798.5  bits: 155.0 E(85289): 9.7e-38
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB9 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
              130       140       150       160       170       180

              190       200       210       220       230
pF1KB9 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
              190       200       210       220       230

>>XP_016880721 (OMIM: 608059,613686) PREDICTED: transcri  (265 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 797.8  bits: 155.1 E(85289): 1.1e-37
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:36-265)

                                             10        20        30
pF1KB9                               MVTRDRAENRDGPKMLKPLVEKRRRDRINR
                                     ::::::::::::::::::::::::::::::
XP_016 GSGPIPPTLGPRNIRLQASREPVHTGSGGAMVTRDRAENRDGPKMLKPLVEKRRRDRINR
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KB9 SLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLRERSRVEPPAAAAPGVPRSPVQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLRERSRVEPPAAAAPGVPRSPVQDA
          70        80        90       100       110       120     

              100       110       120       130       140       150
pF1KB9 EALASCYLSGFRECLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPKPVDPRPPAPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EALASCYLSGFRECLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPKPVDPRPPAPRP
         130       140       150       160       170       180     

              160       170       180       190       200       210
pF1KB9 SLDPAAPALGPALHQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAPAPLTGLLPPPPPPHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLDPAAPALGPALHQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAPAPLTGLLPPPPPPHR
         190       200       210       220       230       240     

              220       230
pF1KB9 QDGAPKAPLPPPPAFWRPWP
       ::::::::::::::::::::
XP_016 QDGAPKAPLPPPPAFWRPWP
         250       260     

>>NP_115969 (OMIM: 608059,613686) transcription factor H  (225 aa)
 initn: 1146 init1: 1146 opt: 1599  Z-score: 775.3  bits: 150.7 E(85289): 1.9e-36
Smith-Waterman score: 1599; 97.8% identity (97.8% similar) in 230 aa overlap (1-230:1-225)

               10        20        30        40        50        60
pF1KB9 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
       :::::::::::::::     ::::::::::::::::::::::::::::::::::::::::
NP_115 FAVGYLRERSRVEPP-----GVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
               70             80        90       100       110     

              130       140       150       160       170       180
pF1KB9 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
         120       130       140       150       160       170     

              190       200       210       220       230
pF1KB9 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
         180       190       200       210       220     

>>XP_011522343 (OMIM: 608059,613686) PREDICTED: transcri  (259 aa)
 initn: 1554 init1: 1554 opt: 1554  Z-score: 753.6  bits: 146.9 E(85289): 3.1e-35
Smith-Waterman score: 1554; 99.5% identity (100.0% similar) in 217 aa overlap (14-230:43-259)

                                10        20        30        40   
pF1KB9                  MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERT
                                     .:::::::::::::::::::::::::::::
XP_011 PGAPSLACRHFVLKPSSGQASFCGGSCSWFEMLKPLVEKRRRDRINRSLEELRLLLLERT
             20        30        40        50        60        70  

            50        60        70        80        90       100   
pF1KB9 RDQNLRNPKLEKAEILEFAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDQNLRNPKLEKAEILEFAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRE
             80        90       100       110       120       130  

           110       120       130       140       150       160   
pF1KB9 CLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPAL
            140       150       160       170       180       190  

           170       180       190       200       210       220   
pF1KB9 HQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPP
            200       210       220       230       240       250  

           230
pF1KB9 AFWRPWP
       :::::::
XP_011 AFWRPWP
              




230 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:20:33 2016 done: Fri Nov  4 18:20:34 2016
 Total Scan time:  8.360 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]