FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9689, 230 aa
  1>>>pF1KB9689 230 - 230 aa - 230 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3871+/-0.000908; mu= -4.8018+/- 0.055
 mean_var=409.0280+/-82.295, 0's: 0 Z-trim(118.6): 21  B-trim: 0 in 0/54
 Lambda= 0.063416
 statistics sampled from 19628 (19648) to 19628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.604), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS54085.1 HES7 gene_id:84667|Hs108|chr17         ( 230) 1649 163.4 1.1e-40
CCDS42258.1 HES7 gene_id:84667|Hs108|chr17         ( 225) 1599 158.8 2.6e-39


>>CCDS54085.1 HES7 gene_id:84667|Hs108|chr17              (230 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 843.7  bits: 163.4 E(32554): 1.1e-40
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB9 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
              130       140       150       160       170       180

              190       200       210       220       230
pF1KB9 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
              190       200       210       220       230

>>CCDS42258.1 HES7 gene_id:84667|Hs108|chr17              (225 aa)
 initn: 1146 init1: 1146 opt: 1599  Z-score: 819.1  bits: 158.8 E(32554): 2.6e-39
Smith-Waterman score: 1599; 97.8% identity (97.8% similar) in 230 aa overlap (1-230:1-225)

               10        20        30        40        50        60
pF1KB9 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MVTRDRAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FAVGYLRERSRVEPPAAAAPGVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
       :::::::::::::::     ::::::::::::::::::::::::::::::::::::::::
CCDS42 FAVGYLRERSRVEPP-----GVPRSPVQDAEALASCYLSGFRECLLRLAAFAHDASPAAR
               70             80        90       100       110     

              130       140       150       160       170       180
pF1KB9 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AQLFSALHGYLRPKPPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAW
         120       130       140       150       160       170     

              190       200       210       220       230
pF1KB9 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPWP
         180       190       200       210       220     




230 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:20:32 2016 done: Fri Nov  4 18:20:32 2016
 Total Scan time:  2.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]