Result of FASTA (omim) for
pF1KB9688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9688, 222 aa
1>>>pF1KB9688 222 - 222 aa - 222 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7420+/-0.000321; mu= 6.1506+/- 0.020
mean_var=204.7626+/-41.045, 0's: 0 Z-trim(123.5): 199 B-trim: 119 in 1/55
Lambda= 0.089629
statistics sampled from 43261 (43510) to 43261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.51), width: 16
Scan time: 6.570
The best scores are: opt bits E(85289)
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 1530 209.0 5e-54
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 525 79.2 7.5e-15
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 524 79.0 8.3e-15
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 502 76.2 5.7e-14
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 458 70.5 3e-12
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 458 70.5 3e-12
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 456 70.2 3.5e-12
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 457 70.4 3.8e-12
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 422 65.8 6.8e-11
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 422 65.8 6.8e-11
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 422 65.8 6.8e-11
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 422 65.9 8.1e-11
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 413 64.4 1.2e-10
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 413 64.6 1.6e-10
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 413 64.6 1.6e-10
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 396 62.4 6.8e-10
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 391 61.8 1.1e-09
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 362 58.1 1.8e-08
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 357 57.5 2.7e-08
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 353 56.9 3.5e-08
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 353 56.9 3.5e-08
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 353 56.9 3.5e-08
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 349 56.4 5e-08
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 342 55.7 1.4e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 342 55.7 1.4e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 342 55.7 1.4e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 342 55.7 1.4e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 342 55.7 1.4e-07
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 342 55.7 1.4e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 342 55.7 1.4e-07
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 333 54.3 2.1e-07
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 311 51.1 8.5e-07
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 317 52.3 9.8e-07
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 317 52.4 1.2e-06
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 315 52.2 1.6e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 315 52.2 1.6e-06
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 312 51.7 1.8e-06
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 309 51.2 1.9e-06
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 312 51.8 2e-06
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 307 51.1 2.8e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 307 51.1 2.9e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 305 50.8 3e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 305 50.8 3.4e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 305 50.8 3.4e-06
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 1530 init1: 1530 opt: 1530 Z-score: 1090.9 bits: 209.0 E(85289): 5e-54
Smith-Waterman score: 1530; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL
130 140 150 160 170 180
190 200 210 220
pF1KB9 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::::::::::::::::::::::::::
NP_061 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
190 200 210 220
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 521 init1: 404 opt: 525 Z-score: 387.6 bits: 79.2 E(85289): 7.5e-15
Smith-Waterman score: 553; 41.0% identity (60.5% similar) in 256 aa overlap (8-218:8-257)
10 20 30 40
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR------------YCYGGLDLSIT
:: . :: : :.. ::::.: ...: : :.:.:::..
NP_002 MSSYFVNSFSGRYPNGPDYQLL---NYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVN
10 20 30 40 50
50 60 70 80 90
pF1KB9 ------------------FPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE
:: :: .. . .. . :. :. . . : : .
NP_002 RSSASSSHFGAVGESSRAFPAPAQEPRFRQA-ASSCSLSSPESLPCTNGDSHGAKP--SA
60 70 80 90 100 110
100 110 120 130
pF1KB9 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAP------------P
..: . . ....: . ..:..:.: .: .: ..:. : : :
NP_002 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB9 QIYPWMTKLHMSHET---DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN
::.::: :::.::. ::::.::.::::::::::::::::::::::::::::. :::.
NP_002 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
180 190 200 210 220 230
200 210 220
pF1KB9 ERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::.:.::
NP_002 ERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
240 250 260
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 523 init1: 410 opt: 524 Z-score: 386.8 bits: 79.0 E(85289): 8.3e-15
Smith-Waterman score: 589; 45.0% identity (65.7% similar) in 251 aa overlap (9-218:9-258)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP
: . :: : :.... :...:.:: ....:: :: :.:::.
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
10 20 30 40 50 60
60 70 80 90 100
pF1KB9 PAPSNS-LHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE-----AAPLNPGMYSQKAAR
. .: .. ..::. : : .: : :. :.: : .:: .:: :.....
NP_061 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAP-SPGSDSHHGGK
70 80 90 100 110
110 120 130 140
pF1KB9 PAL------------------EERAKSSGEIKEEQAQTGQPAGLSQP-PAPP---QIYPW
.: : . .:: .. :.. : .. :.: :::: :::::
NP_061 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW
120 130 140 150 160 170
150 160 170 180 190
pF1KB9 MTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
: :::.::.. .:::.::.::::::::::::::::::::::::::::. :::.::::
NP_061 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI
180 190 200 210 220 230
200 210 220
pF1KB9 KIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::.:.::
NP_061 KIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
240 250 260 270
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 513 init1: 366 opt: 502 Z-score: 371.8 bits: 76.2 E(85289): 5.7e-14
Smith-Waterman score: 502; 44.9% identity (64.4% similar) in 225 aa overlap (1-216:3-215)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPA--PSN
::::..:: : . :..: . :.: . :.. : ::: . : ::. :
NP_055 MVMSSYMVNSKYVD-PKFPPCEEYLQGGYLGE---QGADY-YGGGAQGADFQPPGLYPRP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SLHGVDMAAN-PRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSS
.. .... : :: . . :: .:: ::: .: . : :: :..
NP_055 DFGEQPFGGSGPGPGSALPARGHGQEPG-GPGGHYAAPGEP-CPAPPAPPPAPLPGARAY
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDG--KRSRTSYTRYQTLE
.. .: .: ..:.:: . .:::: :.:.. . : : :::::.::: :.::
NP_055 SQSDPKQPPSG--TALKQPAV---VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE
120 130 140 150 160
170 180 190 200 210 220
pF1KB9 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::::..:::.:::::::::::::::::: :.
NP_055 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSS
170 180 190 200 210 220
NP_055 SSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 494 init1: 360 opt: 458 Z-score: 340.8 bits: 70.5 E(85289): 3e-12
Smith-Waterman score: 468; 40.7% identity (57.7% similar) in 241 aa overlap (1-216:3-217)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------P
::::. .: : . :..: : .:.. : . : : : :
NP_055 MIMSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYP
10 20 30 40 50
60 70 80 90 100
pF1KB9 PPAPSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE
:: : : .:.: .:.. .::.. :. .: . : . . .. .:
NP_055 PPPPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQ-SLC
60 70 80 90
110 120 130 140 150
pF1KB9 ERAKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMSH---ETDG-
: : :: . . : . ::: :: : .:::: :.:.: . .:
NP_055 EPAPLSGA---SASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB9 --KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKD
:::::.::: :.::::::::.:::::::::::::..:::.::::::::::::::::::
NP_055 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD
160 170 180 190 200 210
220
pF1KB9 SKMKSKEAL
..
NP_055 HRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
220 230 240 250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 494 init1: 360 opt: 458 Z-score: 340.8 bits: 70.5 E(85289): 3e-12
Smith-Waterman score: 468; 40.7% identity (57.7% similar) in 241 aa overlap (1-216:3-217)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------P
::::. .: : . :..: : .:.. : . : : : :
NP_705 MIMSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYP
10 20 30 40 50
60 70 80 90 100
pF1KB9 PPAPSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE
:: : : .:.: .:.. .::.. :. .: . : . . .. .:
NP_705 PPPPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQ-SLC
60 70 80 90
110 120 130 140 150
pF1KB9 ERAKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMSH---ETDG-
: : :: . . : . ::: :: : .:::: :.:.: . .:
NP_705 EPAPLSGA---SASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB9 --KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKD
:::::.::: :.::::::::.:::::::::::::..:::.::::::::::::::::::
NP_705 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD
160 170 180 190 200 210
220
pF1KB9 SKMKSKEAL
..
NP_705 HRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
220 230 240 250 260
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 469 init1: 360 opt: 456 Z-score: 339.7 bits: 70.2 E(85289): 3.5e-12
Smith-Waterman score: 456; 40.1% identity (56.5% similar) in 232 aa overlap (1-216:3-223)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSL
:::.. :: : . :..: . . ..: .. .. : :: .: : :
NP_076 MAMSSFLINSNYVD-PKFPPCEEYSQSDYLPSD--HSPGYYAGGQRRESSFQPEAG----
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 HGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEI
: : . . . :: . : : : ::. . : : :.
NP_076 FGRRAACTVQRYA---ACRDPGPPPPPPPPPPPPP-PPGLSPRAPAPPPAGALLPEPGQR
60 70 80 90 100
120 130 140 150 160
pF1KB9 KEEQAQTGQPAGLSQ-P--PAP-------PQIYPWMTKLHMS----HETDG--KRSRTSY
: ... : .: : :.: : .:::: :.:.: . . : :::::.:
NP_076 CEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAY
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 TRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
:: :.::::::::.:::::::::.:::. :::.:::::::::::::::::: :.
NP_076 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR
170 180 190 200 210 220
NP_076 SGGAAGSAGGPPGRPNGGPRAL
230 240 250
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 431 init1: 365 opt: 457 Z-score: 339.1 bits: 70.4 E(85289): 3.8e-12
Smith-Waterman score: 467; 42.3% identity (58.1% similar) in 227 aa overlap (2-216:71-276)
10 20 30
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSAS
.:: : .. : :: . .:.:.
NP_002 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTARE-PAYPAAALYP--AHGAAD
50 60 70 80 90
40 50 60 70 80
pF1KB9 EVQASRYCYGGLDLSITFP--PPA----PSNSLHGVDMAANPRAHPDRPACSAAAAPGHA
. : :. : ::: :...::. . : .: :.: :
NP_002 TAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPR----AVPPAA
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB9 PGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMT
: : :::: .::. . .: :: ... : ::. : .::::
NP_002 PRRCEAAPATPGVPAGGSA-PACPLLLADKS-----------PLGLKGKE--PVVYPWMK
160 170 180 190
150 160 170 180 190
pF1KB9 KLHMS------HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
:.:.: . . :::::.::: :.::::::::::::::::::::::..:::.:::.
NP_002 KIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQV
200 210 220 230 240 250
200 210 220
pF1KB9 KIWFQNRRMKWKKDSKMKSKEAL
:::::::::::::: :.
NP_002 KIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSS
260 270 280 290 300 310
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 430 init1: 347 opt: 422 Z-score: 316.6 bits: 65.8 E(85289): 6.8e-11
Smith-Waterman score: 429; 45.9% identity (64.7% similar) in 170 aa overlap (67-222:45-213)
40 50 60 70 80 90
pF1KB9 RYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLN-
: :. ... : . : .::: .
XP_005 ASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDY
20 30 40 50 60 70
100 110 120 130 140
pF1KB9 ---PGMYSQKAARPAL---EERAKSSGEI-KEEQAQTGQPAGLS--QPPAPPQIYPWMTK
:..: .: . :: .:. : : . :: . : . : . : .:::: .
XP_005 GPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTP-VYPWMQR
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB9 LHMSHETD----GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIW
.. . .. :.:.: .::::::::::::::.:::::::::::::. :::.:::::::
XP_005 MNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW
140 150 160 170 180 190
210 220
pF1KB9 FQNRRMKWKKDSKMKSKEAL
::::::::::.::. : :
XP_005 FQNRRMKWKKESKLLSASQLSAEEEEEKQAE
200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 430 init1: 347 opt: 422 Z-score: 316.6 bits: 65.8 E(85289): 6.8e-11
Smith-Waterman score: 429; 45.9% identity (64.7% similar) in 170 aa overlap (67-222:45-213)
40 50 60 70 80 90
pF1KB9 RYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLN-
: :. ... : . : .::: .
NP_061 ASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDY
20 30 40 50 60 70
100 110 120 130 140
pF1KB9 ---PGMYSQKAARPAL---EERAKSSGEI-KEEQAQTGQPAGLS--QPPAPPQIYPWMTK
:..: .: . :: .:. : : . :: . : . : . : .:::: .
NP_061 GPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTP-VYPWMQR
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB9 LHMSHETD----GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIW
.. . .. :.:.: .::::::::::::::.:::::::::::::. :::.:::::::
NP_061 MNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW
140 150 160 170 180 190
210 220
pF1KB9 FQNRRMKWKKDSKMKSKEAL
::::::::::.::. : :
NP_061 FQNRRMKWKKESKLLSASQLSAEEEEEKQAE
200 210 220
222 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:20:05 2016 done: Fri Nov 4 18:20:06 2016
Total Scan time: 6.570 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]