Result of FASTA (omim) for
pF1KB9684
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9684, 164 aa
1>>>pF1KB9684 164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3757+/-0.000303; mu= 12.1263+/- 0.019
mean_var=71.9585+/-13.834, 0's: 0 Z-trim(117.7): 199 B-trim: 205 in 3/54
Lambda= 0.151194
statistics sampled from 29766 (29965) to 29766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.351), width: 16
Scan time: 5.520
The best scores are: opt bits E(85289)
NP_689908 (OMIM: 300627) zinc finger protein 449 [ ( 518) 815 186.5 5.2e-47
XP_011529614 (OMIM: 300627) PREDICTED: zinc finger ( 518) 815 186.5 5.2e-47
XP_011520954 (OMIM: 608387) PREDICTED: zinc finger ( 285) 437 103.9 2.1e-22
NP_004211 (OMIM: 608387) zinc finger protein 213 [ ( 459) 437 104.0 3.1e-22
NP_001128127 (OMIM: 608387) zinc finger protein 21 ( 459) 437 104.0 3.1e-22
NP_001309220 (OMIM: 609600) zinc finger protein 39 ( 210) 431 102.5 4.1e-22
XP_016868074 (OMIM: 601261) PREDICTED: zinc finger ( 450) 435 103.6 4.1e-22
XP_005250625 (OMIM: 601261) PREDICTED: zinc finger ( 473) 435 103.6 4.3e-22
XP_006716176 (OMIM: 601261) PREDICTED: zinc finger ( 473) 435 103.6 4.3e-22
NP_666019 (OMIM: 601261) zinc finger and SCAN doma ( 473) 435 103.6 4.3e-22
XP_016868073 (OMIM: 601261) PREDICTED: zinc finger ( 473) 435 103.6 4.3e-22
XP_016881178 (OMIM: 609600) PREDICTED: zinc finger ( 266) 431 102.6 4.9e-22
NP_665699 (OMIM: 609600) zinc finger protein 396 i ( 333) 431 102.6 5.9e-22
NP_001309219 (OMIM: 609600) zinc finger protein 39 ( 335) 431 102.6 5.9e-22
XP_006722495 (OMIM: 609600) PREDICTED: zinc finger ( 335) 431 102.6 5.9e-22
NP_001309215 (OMIM: 609600) zinc finger protein 39 ( 335) 431 102.6 5.9e-22
XP_016881176 (OMIM: 609600) PREDICTED: zinc finger ( 335) 431 102.6 5.9e-22
XP_016881177 (OMIM: 609600) PREDICTED: zinc finger ( 335) 431 102.6 5.9e-22
XP_016867413 (OMIM: 611272) PREDICTED: zinc finger ( 766) 433 103.3 8.6e-22
XP_016867412 (OMIM: 611272) PREDICTED: zinc finger ( 766) 433 103.3 8.6e-22
NP_001305012 (OMIM: 611272) zinc finger protein wi ( 766) 433 103.3 8.6e-22
XP_016867411 (OMIM: 611272) PREDICTED: zinc finger ( 838) 433 103.3 9.3e-22
XP_016867410 (OMIM: 611272) PREDICTED: zinc finger ( 838) 433 103.3 9.3e-22
XP_016867409 (OMIM: 611272) PREDICTED: zinc finger ( 838) 433 103.3 9.3e-22
NP_055384 (OMIM: 611272) zinc finger protein with ( 839) 433 103.3 9.3e-22
NP_001305011 (OMIM: 611272) zinc finger protein wi ( 839) 433 103.3 9.3e-22
XP_016867408 (OMIM: 611272) PREDICTED: zinc finger ( 839) 433 103.3 9.3e-22
NP_659570 (OMIM: 611272) zinc finger protein with ( 839) 433 103.3 9.3e-22
XP_016867407 (OMIM: 611272) PREDICTED: zinc finger ( 839) 433 103.3 9.3e-22
XP_006710939 (OMIM: 611315) PREDICTED: zinc finger ( 989) 430 102.7 1.7e-21
XP_016857727 (OMIM: 611315) PREDICTED: zinc finger (1042) 430 102.7 1.7e-21
XP_005271228 (OMIM: 611315) PREDICTED: zinc finger (1042) 430 102.7 1.7e-21
XP_006710937 (OMIM: 611315) PREDICTED: zinc finger (1043) 430 102.7 1.7e-21
XP_016857726 (OMIM: 611315) PREDICTED: zinc finger (1043) 430 102.7 1.7e-21
NP_660281 (OMIM: 611315) zinc finger and SCAN doma (1043) 430 102.7 1.7e-21
NP_443155 (OMIM: 615254) SCAN domain-containing pr (1325) 427 102.1 3.3e-21
XP_011513319 (OMIM: 603978) PREDICTED: zinc finger ( 565) 410 98.2 2.2e-20
NP_001156863 (OMIM: 603978) zinc finger and SCAN d ( 611) 410 98.2 2.3e-20
XP_011513316 (OMIM: 603978) PREDICTED: zinc finger ( 611) 410 98.2 2.3e-20
XP_011513317 (OMIM: 603978) PREDICTED: zinc finger ( 611) 410 98.2 2.3e-20
XP_016867017 (OMIM: 603978) PREDICTED: zinc finger ( 611) 410 98.2 2.3e-20
NP_006290 (OMIM: 602246) zinc finger and SCAN doma ( 394) 404 96.8 4e-20
XP_016866756 (OMIM: 602246) PREDICTED: zinc finger ( 394) 404 96.8 4e-20
NP_001186409 (OMIM: 602246) zinc finger and SCAN d ( 394) 404 96.8 4e-20
NP_115723 (OMIM: 609601) zinc finger protein 397 i ( 275) 402 96.3 4.1e-20
NP_001186408 (OMIM: 602246) zinc finger and SCAN d ( 445) 404 96.8 4.4e-20
XP_011524531 (OMIM: 609601) PREDICTED: zinc finger ( 553) 405 97.1 4.6e-20
XP_006722621 (OMIM: 609601) PREDICTED: zinc finger ( 553) 405 97.1 4.6e-20
XP_011524532 (OMIM: 609601) PREDICTED: zinc finger ( 553) 405 97.1 4.6e-20
XP_011513180 (OMIM: 602246) PREDICTED: zinc finger ( 526) 404 96.9 5.1e-20
>>NP_689908 (OMIM: 300627) zinc finger protein 449 [Homo (518 aa)
initn: 833 init1: 815 opt: 815 Z-score: 965.0 bits: 186.5 E(85289): 5.2e-47
Smith-Waterman score: 815; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNKLWELCCQWLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNKLWELCCQWLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQVD
70 80 90 100 110 120
130 140 150 160
pF1KB9 KECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
NP_689 MHDMLLEELAPVGTAHIPPTMHLESPALQVMGPAQEAPVAEAWIPQAGPPELNYGATGEC
130 140 150 160 170 180
>>XP_011529614 (OMIM: 300627) PREDICTED: zinc finger pro (518 aa)
initn: 833 init1: 815 opt: 815 Z-score: 965.0 bits: 186.5 E(85289): 5.2e-47
Smith-Waterman score: 815; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNKLWELCCQWLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNKLWELCCQWLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQVD
70 80 90 100 110 120
130 140 150 160
pF1KB9 KECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
XP_011 MHDMLLEELAPVGTAHIPPTMHLESPALQVMGPAQEAPVAEAWIPQAGPPELNYGATGEC
130 140 150 160 170 180
>>XP_011520954 (OMIM: 608387) PREDICTED: zinc finger pro (285 aa)
initn: 426 init1: 409 opt: 437 Z-score: 523.2 bits: 103.9 E(85289): 2.1e-22
Smith-Waterman score: 442; 47.7% identity (70.9% similar) in 151 aa overlap (11-152:26-170)
10 20 30 40
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPH
.: .: :. .: : :. ::::::: : .. :::
XP_011 MAAPLEAQDQAPGEGEGLLIVKVEDSSWEQESAQHEDGRDSEACRQRFRQFCYGDVHGPH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 EAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLI
:::..::::::.::.:..:.:::::::::::::::.:: ::. ::::. : . :..:.:.
XP_011 EAFSQLWELCCRWLRPELRTKEQILELLVLEQFLTVLPGEIQGWVREQHPGSGEEAVALV
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 EDLQRE------LEIPEQQVRKEC---GIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSR
::::.. ..: .... : : . :: .. .: :: . :: :
XP_011 EDLQKQPVKAWRQDVPSEEAEPEAAGRGSQATGPPPTV-GARRRPSV-----PQEQHSHS
130 140 150 160 170
160
pF1KB9 VLFLFLFC
XP_011 AQPPALLKEGRPGETTDTCFVSGVHGPVALGDIPFYFSREEWGTLDPAQRDLFWDIKREN
180 190 200 210 220 230
>>NP_004211 (OMIM: 608387) zinc finger protein 213 [Homo (459 aa)
initn: 409 init1: 409 opt: 437 Z-score: 520.2 bits: 104.0 E(85289): 3.1e-22
Smith-Waterman score: 442; 47.7% identity (70.9% similar) in 151 aa overlap (11-152:26-170)
10 20 30 40
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPH
.: .: :. .: : :. ::::::: : .. :::
NP_004 MAAPLEAQDQAPGEGEGLLIVKVEDSSWEQESAQHEDGRDSEACRQRFRQFCYGDVHGPH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 EAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLI
:::..::::::.::.:..:.:::::::::::::::.:: ::. ::::. : . :..:.:.
NP_004 EAFSQLWELCCRWLRPELRTKEQILELLVLEQFLTVLPGEIQGWVREQHPGSGEEAVALV
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 EDLQRE------LEIPEQQVRKEC---GIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSR
::::.. ..: .... : : . :: .. .: :: . :: :
NP_004 EDLQKQPVKAWRQDVPSEEAEPEAAGRGSQATGPPPTV-GARRRPSV-----PQEQHSHS
130 140 150 160 170
160
pF1KB9 VLFLFLFC
NP_004 AQPPALLKEGRPGETTDTCFVSGVHGPVALGDIPFYFSREEWGTLDPAQRDLFWDIKREN
180 190 200 210 220 230
>>NP_001128127 (OMIM: 608387) zinc finger protein 213 [H (459 aa)
initn: 409 init1: 409 opt: 437 Z-score: 520.2 bits: 104.0 E(85289): 3.1e-22
Smith-Waterman score: 442; 47.7% identity (70.9% similar) in 151 aa overlap (11-152:26-170)
10 20 30 40
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPH
.: .: :. .: : :. ::::::: : .. :::
NP_001 MAAPLEAQDQAPGEGEGLLIVKVEDSSWEQESAQHEDGRDSEACRQRFRQFCYGDVHGPH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 EAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLI
:::..::::::.::.:..:.:::::::::::::::.:: ::. ::::. : . :..:.:.
NP_001 EAFSQLWELCCRWLRPELRTKEQILELLVLEQFLTVLPGEIQGWVREQHPGSGEEAVALV
70 80 90 100 110 120
110 120 130 140 150
pF1KB9 EDLQRE------LEIPEQQVRKEC---GIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSR
::::.. ..: .... : : . :: .. .: :: . :: :
NP_001 EDLQKQPVKAWRQDVPSEEAEPEAAGRGSQATGPPPTV-GARRRPSV-----PQEQHSHS
130 140 150 160 170
160
pF1KB9 VLFLFLFC
NP_001 AQPPALLKEGRPGETTDTCFVSGVHGPVALGDIPFYFSREEWGTLDPAQRDLFWDIKREN
180 190 200 210 220 230
>>NP_001309220 (OMIM: 609600) zinc finger protein 396 is (210 aa)
initn: 456 init1: 410 opt: 431 Z-score: 518.1 bits: 102.5 E(85289): 4.1e-22
Smith-Waterman score: 431; 48.5% identity (78.8% similar) in 132 aa overlap (7-135:34-160)
10 20 30
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQF
: ..::. .: .. :.:::.::::
NP_001 KLGKSSSLLTQTSEECNGILTEKMEEEEQTCDPDSSLHWSSSYSP-----ETFRQQFRQF
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 QYREAAGPHEAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPE
:... :::::...::::: ::.:....::::::::::::::.::: :...::..: ::
NP_001 GYQDSPGPHEALSRLWELCHLWLRPEVHTKEQILELLVLEQFLAILPKELQAWVQKHHPE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 NRERVVSLIEDLQRELEIPEQQV---RKECGIFVIGPKEVAEAAGTRPHICLYVIPQPQD
: :..:...::..:::. :.: ::. ..:.:..:
NP_001 NGEETVTMLEDVERELDGPKQIFFGRRKDMIAEKLAPSEITEELPSSQLMPVKKQLQGAS
120 130 140 150 160 170
160
pF1KB9 FSRVLFLFLFC
NP_001 WELQSLRPHGEGAGFSSCWKVWGPSAHHTHLS
180 190 200 210
>>XP_016868074 (OMIM: 601261) PREDICTED: zinc finger and (450 aa)
initn: 433 init1: 433 opt: 435 Z-score: 517.9 bits: 103.6 E(85289): 4.1e-22
Smith-Waterman score: 435; 60.6% identity (88.9% similar) in 99 aa overlap (21-119:36-134)
10 20 30 40 50
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNK
.: . :.:::::::: :... ::.::...
XP_016 LGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPREALSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQR
: :::.::.:....:::::::::::::::::: :...::.:::::. :..:.:.:::.:
XP_016 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLER
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 ELEIPEQQVRKECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
::. : .::
XP_016 ELDEPGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYIQESGE
130 140 150 160 170 180
>>XP_005250625 (OMIM: 601261) PREDICTED: zinc finger and (473 aa)
initn: 452 init1: 433 opt: 435 Z-score: 517.6 bits: 103.6 E(85289): 4.3e-22
Smith-Waterman score: 435; 60.6% identity (88.9% similar) in 99 aa overlap (21-119:36-134)
10 20 30 40 50
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNK
.: . :.:::::::: :... ::.::...
XP_005 LGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPREALSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQR
: :::.::.:....:::::::::::::::::: :...::.:::::. :..:.:.:::.:
XP_005 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLER
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 ELEIPEQQVRKECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
::. : .::
XP_005 ELDEPGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYIQESGE
130 140 150 160 170 180
>>XP_006716176 (OMIM: 601261) PREDICTED: zinc finger and (473 aa)
initn: 452 init1: 433 opt: 435 Z-score: 517.6 bits: 103.6 E(85289): 4.3e-22
Smith-Waterman score: 435; 60.6% identity (88.9% similar) in 99 aa overlap (21-119:36-134)
10 20 30 40 50
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNK
.: . :.:::::::: :... ::.::...
XP_006 LGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPREALSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQR
: :::.::.:....:::::::::::::::::: :...::.:::::. :..:.:.:::.:
XP_006 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLER
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 ELEIPEQQVRKECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
::. : .::
XP_006 ELDEPGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYIQESGE
130 140 150 160 170 180
>>NP_666019 (OMIM: 601261) zinc finger and SCAN domain-c (473 aa)
initn: 452 init1: 433 opt: 435 Z-score: 517.6 bits: 103.6 E(85289): 4.3e-22
Smith-Waterman score: 435; 60.6% identity (88.9% similar) in 99 aa overlap (21-119:36-134)
10 20 30 40 50
pF1KB9 MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYREAAGPHEAFNK
.: . :.:::::::: :... ::.::...
NP_666 LGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPREALSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQR
: :::.::.:....:::::::::::::::::: :...::.:::::. :..:.:.:::.:
NP_666 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLER
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 ELEIPEQQVRKECGIFVIGPKEVAEAAGTRPHICLYVIPQPQDFSRVLFLFLFC
::. : .::
NP_666 ELDEPGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYIQESGE
130 140 150 160 170 180
164 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:18:48 2016 done: Fri Nov 4 18:18:49 2016
Total Scan time: 5.520 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]