Result of FASTA (omim) for
pF1KB9681
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9681, 140 aa
1>>>pF1KB9681 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4426+/-0.000354; mu= 15.5453+/- 0.022
mean_var=51.3980+/-10.256, 0's: 0 Z-trim(111.8): 23 B-trim: 0 in 0/53
Lambda= 0.178896
statistics sampled from 20545 (20568) to 20545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.241), width: 16
Scan time: 4.190
The best scores are: opt bits E(85289)
XP_011543867 (OMIM: 300202,313400) PREDICTED: traf ( 140) 960 255.2 2.5e-68
NP_001011658 (OMIM: 300202,313400) trafficking pro ( 140) 960 255.2 2.5e-68
NP_055378 (OMIM: 300202,313400) trafficking protei ( 140) 960 255.2 2.5e-68
XP_011543868 (OMIM: 300202,313400) PREDICTED: traf ( 140) 960 255.2 2.5e-68
NP_001122307 (OMIM: 300202,313400) trafficking pro ( 174) 960 255.3 2.9e-68
NP_001305418 (OMIM: 610971) trafficking protein pa ( 165) 131 41.3 0.00072
NP_001305421 (OMIM: 610971) trafficking protein pa ( 114) 128 40.4 0.00091
NP_001305419 (OMIM: 610971) trafficking protein pa ( 176) 128 40.6 0.0013
NP_057230 (OMIM: 610971) trafficking protein parti ( 219) 128 40.6 0.0015
NP_001305415 (OMIM: 610971) trafficking protein pa ( 113) 125 39.7 0.0015
NP_001305423 (OMIM: 610971) trafficking protein pa ( 126) 125 39.7 0.0017
NP_001305459 (OMIM: 610970) trafficking protein pa ( 109) 123 39.1 0.0022
NP_001305454 (OMIM: 610970) trafficking protein pa ( 139) 123 39.2 0.0026
NP_001305457 (OMIM: 610970) trafficking protein pa ( 110) 117 37.6 0.0063
NP_057293 (OMIM: 610970) trafficking protein parti ( 140) 117 37.7 0.0077
>>XP_011543867 (OMIM: 300202,313400) PREDICTED: traffick (140 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1347.8 bits: 255.2 E(85289): 2.5e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
70 80 90 100 110 120
130 140
pF1KB9 IRSSAFDRKVQFLGKKHLLS
::::::::::::::::::::
XP_011 IRSSAFDRKVQFLGKKHLLS
130 140
>>NP_001011658 (OMIM: 300202,313400) trafficking protein (140 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1347.8 bits: 255.2 E(85289): 2.5e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
70 80 90 100 110 120
130 140
pF1KB9 IRSSAFDRKVQFLGKKHLLS
::::::::::::::::::::
NP_001 IRSSAFDRKVQFLGKKHLLS
130 140
>>NP_055378 (OMIM: 300202,313400) trafficking protein pa (140 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1347.8 bits: 255.2 E(85289): 2.5e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
70 80 90 100 110 120
130 140
pF1KB9 IRSSAFDRKVQFLGKKHLLS
::::::::::::::::::::
NP_055 IRSSAFDRKVQFLGKKHLLS
130 140
>>XP_011543868 (OMIM: 300202,313400) PREDICTED: traffick (140 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1347.8 bits: 255.2 E(85289): 2.5e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
70 80 90 100 110 120
130 140
pF1KB9 IRSSAFDRKVQFLGKKHLLS
::::::::::::::::::::
XP_011 IRSSAFDRKVQFLGKKHLLS
130 140
>>NP_001122307 (OMIM: 300202,313400) trafficking protein (174 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1346.5 bits: 255.3 E(85289): 2.9e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:35-174)
10 20 30
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAES
::::::::::::::::::::::::::::::
NP_001 KQDRSGLRSTELNVLEYQPLCAVRSHILKTMSGSFYFVIVGHHDNPVFEMEFLPAGKAES
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 KDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIR
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 QEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS
130 140 150 160 170
>>NP_001305418 (OMIM: 610971) trafficking protein partic (165 aa)
initn: 96 init1: 65 opt: 131 Z-score: 190.5 bits: 41.3 E(85289): 0.00072
Smith-Waterman score: 131; 28.1% identity (61.5% similar) in 96 aa overlap (41-132:59-150)
20 30 40 50 60
pF1KB9 GHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDL--VDEN-MWLSNNMYLKTVDKF
..::.: . .: : . ... . .: :
NP_001 EKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEMLETDTF
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB9 NEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAF
. . . : ..:..: : :: :: ... .:..: :.. :::: . ::: :
NP_001 K---LHCYQTLTGIKFVVLADPRQA-GIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELF
90 100 110 120 130 140
130 140
pF1KB9 DRKVQFLGKKHLLS
:.....
NP_001 DQNLKLALEVAEKAGTFGPGS
150 160
>>NP_001305421 (OMIM: 610971) trafficking protein partic (114 aa)
initn: 84 init1: 65 opt: 128 Z-score: 188.6 bits: 40.4 E(85289): 0.00091
Smith-Waterman score: 128; 29.5% identity (62.8% similar) in 78 aa overlap (56-132:26-99)
30 40 50 60 70 80
pF1KB9 GKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIM
:... . .: :. . . : ..:..
NP_001 MKNATDPDLDFRLFAIGSQLSPEQGSSGIEMLETDTFK---LHCYQTLTGIKFVV
10 20 30 40 50
90 100 110 120 130 140
pF1KB9 LHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKHLLS
: : :: :: ... .:..: :.. :::: . ::: ::.....
NP_001 LADPRQA-GIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFG
60 70 80 90 100 110
NP_001 PGS
>>NP_001305419 (OMIM: 610971) trafficking protein partic (176 aa)
initn: 96 init1: 65 opt: 128 Z-score: 185.9 bits: 40.6 E(85289): 0.0013
Smith-Waterman score: 128; 29.5% identity (62.8% similar) in 78 aa overlap (56-132:88-161)
30 40 50 60 70 80
pF1KB9 GKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIM
:... . .: :. . . : ..:..
NP_001 RVGHAVLAINGMDVNGRLFAIGSQLSPEQGSSGIEMLETDTFK---LHCYQTLTGIKFVV
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB9 LHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKHLLS
: : :: :: ... .:..: :.. :::: . ::: ::.....
NP_001 LADPRQA-GIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFG
120 130 140 150 160 170
NP_001 PGS
>>NP_057230 (OMIM: 610971) trafficking protein particle (219 aa)
initn: 84 init1: 65 opt: 128 Z-score: 184.6 bits: 40.6 E(85289): 0.0015
Smith-Waterman score: 128; 29.5% identity (62.8% similar) in 78 aa overlap (56-132:131-204)
30 40 50 60 70 80
pF1KB9 GKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIM
:... . .: :. . . : ..:..
NP_057 PRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFK---LHCYQTLTGIKFVV
110 120 130 140 150
90 100 110 120 130 140
pF1KB9 LHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKHLLS
: : :: :: ... .:..: :.. :::: . ::: ::.....
NP_057 LADPRQA-GIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFG
160 170 180 190 200 210
NP_057 PGS
>>NP_001305415 (OMIM: 610971) trafficking protein partic (113 aa)
initn: 79 init1: 65 opt: 125 Z-score: 184.5 bits: 39.7 E(85289): 0.0015
Smith-Waterman score: 125; 35.8% identity (69.8% similar) in 53 aa overlap (81-132:47-98)
60 70 80 90 100 110
pF1KB9 ENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFS
..:..: : :: :: ... .:..: :.
NP_001 TLLITRCPFDLAGPASLLMRSLCWPPCSTRIKFVVLADPRQA-GIDSLLRKIYEIYSDFA
20 30 40 50 60 70
120 130 140
pF1KB9 M-NPFYEPNSPIRSSAFDRKVQFLGKKHLLS
. :::: . ::: ::.....
NP_001 LKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPGS
80 90 100 110
140 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:17:12 2016 done: Fri Nov 4 18:17:13 2016
Total Scan time: 4.190 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]