FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9678, 108 aa
  1>>>pF1KB9678 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9262+/-0.000507; mu= 12.7138+/- 0.031
 mean_var=69.5757+/-13.981, 0's: 0 Z-trim(115.2): 51  B-trim: 0 in 0/54
 Lambda= 0.153761
 statistics sampled from 15684 (15740) to 15684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.484), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS6767.1 TAL2 gene_id:6887|Hs108|chr9            ( 108)  727 168.7 6.1e-43
CCDS547.1 TAL1 gene_id:6886|Hs108|chr1             ( 331)  346 84.6   4e-17
CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19          ( 280)  330 81.0 4.1e-16


>>CCDS6767.1 TAL2 gene_id:6887|Hs108|chr9                 (108 aa)
 initn: 727 init1: 727 opt: 727  Z-score: 884.3  bits: 168.7 E(32554): 6.1e-43
Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE
               10        20        30        40        50        60

               70        80        90       100        
pF1KB9 QSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLENYQVPSPGPSHHIP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLENYQVPSPGPSHHIP
               70        80        90       100        

>>CCDS547.1 TAL1 gene_id:6886|Hs108|chr1                  (331 aa)
 initn: 329 init1: 329 opt: 346  Z-score: 421.0  bits: 84.6 E(32554): 4e-17
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)

                                             10        20        30
pF1KB9                               MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
                                     ..:.::::.::::::::::.:::.::::::
CCDS54 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
         160       170       180       190       200       210     

               40        50        60        70        80        90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
       :::::::::::: :::::.:::::.:.:..:  . :  :  :                  
CCDS54 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
         220       230       240       250       260       270     

              100                                              
pF1KB9 TLLENYQVPSPGPSHHIP                                      
                                                               
CCDS54 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
         280       290       300       310       320       330 

>>CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19               (280 aa)
 initn: 327 init1: 311 opt: 330  Z-score: 402.8  bits: 81.0 E(32554): 4.1e-16
Smith-Waterman score: 332; 53.9% identity (77.5% similar) in 102 aa overlap (1-102:149-234)

                                             10        20        30
pF1KB9                               MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
                                     ..:..:::.::::::::::.:::.::::.:
CCDS12 GPFSIFPSSRLKRRPSHCELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLP
      120       130       140       150       160       170        

               40        50        60        70        80        90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
       :::::.::::::.:::::.::.:::..: .:.   ...::          ::  :: . :
CCDS12 THPPDRKLSKNEVLRLAMKYIGFLVRLLRDQA---AALAA----------GPTPPGPRKR
      180       190       200       210                    220     

              100                                                
pF1KB9 TLLENYQVPSPGPSHHIP                                        
        .   ..::. :                                              
CCDS12 PV---HRVPDDGARRGSGRRAEAAARSQPAPPADPDGSPGGAARPIKMEQTALSPEVR
            230       240       250       260       270       280




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:15:31 2016 done: Fri Nov  4 18:15:31 2016
 Total Scan time:  1.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]