FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9673, 264 aa
  1>>>pF1KB9673 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0357+/-0.000349; mu= 3.3144+/- 0.022
 mean_var=161.4586+/-32.085, 0's: 0 Z-trim(119.2): 4  B-trim: 0 in 0/56
 Lambda= 0.100935
 statistics sampled from 33038 (33041) to 33038 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.387), width:  16
 Scan time:  7.640

The best scores are:                                      opt bits E(85289)
NP_003178 (OMIM: 600822) transcription initiation  ( 264) 1714 260.9 1.8e-69
NP_001015892 (OMIM: 600822) transcription initiati ( 264) 1714 260.9 1.8e-69
NP_057059 (OMIM: 300754) transcription initiation  ( 251) 1317 203.0 4.2e-52


>>NP_003178 (OMIM: 600822) transcription initiation fact  (264 aa)
 initn: 1714 init1: 1714 opt: 1714  Z-score: 1368.4  bits: 260.9 E(85289): 1.8e-69
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

              250       260    
pF1KB9 SNALKRKREDDDDDDDDDDDYDNL
       ::::::::::::::::::::::::
NP_003 SNALKRKREDDDDDDDDDDDYDNL
              250       260    

>>NP_001015892 (OMIM: 600822) transcription initiation f  (264 aa)
 initn: 1714 init1: 1714 opt: 1714  Z-score: 1368.4  bits: 260.9 E(85289): 1.8e-69
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

              250       260    
pF1KB9 SNALKRKREDDDDDDDDDDDYDNL
       ::::::::::::::::::::::::
NP_001 SNALKRKREDDDDDDDDDDDYDNL
              250       260    

>>NP_057059 (OMIM: 300754) transcription initiation fact  (251 aa)
 initn: 1365 init1: 831 opt: 1317  Z-score: 1056.3  bits: 203.0 E(85289): 4.2e-52
Smith-Waterman score: 1317; 80.8% identity (92.2% similar) in 255 aa overlap (1-255:1-249)

               10        20        30        40        50        60
pF1KB9 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::: : ::. :.:: .::::::::::::::::::::::::::::::::::::::::::
NP_057 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
       ::: .:::::::::::::::::::::::::::::::::.:::::::::::.:::::::::
NP_057 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
       :::::::::::: ::. .. ::. :::::::.:.:.:.:::..::  ::.:: .::.:::
NP_057 CLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAVSSKPTTPTIATP--QTVSVPNKVATPM
              130        140        150       160         170      

              190       200       210       220       230       240
pF1KB9 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
       :.:.::::::.: :::  ::  .:::.::::::::::.:: :::::::::.::::::::.
NP_057 SVTSQRFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEA
        180       190        200       210       220       230     

              250       260    
pF1KB9 SNALKRKREDDDDDDDDDDDYDNL
        : ::::.:::::.:         
NP_057 -NPLKRKHEDDDDNDIM       
          240       250        




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:08:35 2016 done: Fri Nov  4 18:08:36 2016
 Total Scan time:  7.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]